barSeed - Barley Seed Development Database

Probe CUST_14576_PI390587928

Source Contig U35_8763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14576_PI390587928	Hv_44K_v2	AATTTGGTTGGTTAACTGTTCTCGCGATGTATGTCCGGTGTAATTATTACAGTGTTTTTT	480	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359099	1244	2e-24	994 - 1053	100	60 / 60	plus	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC	AK365197	696	2e-24	501 - 560	100	60 / 60	plus	ABC19393
MLOC	MLOC_552.1	1349	2e-24	1224 - 1283	100	60 / 60	plus	ABC01219 ABC01222 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
JLOC1	JLOC1_340.1	1283	8e-25	1062 - 1121	100	60 / 60	plus
Harvest21	ABC19393	623	3e-25	84 - 143	100	60 / 60	minus	ABC19393
Harvest35	U35_8763	623	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_8763 623 Hv_44K_v2
GACGAGGCCCTCGGCGGCGGCGCAAACACGGTGGCCGACGGCGTCTCGGTCGGCGCGGGG
CTCGGGGCGGAGATCGCCGGCACGTTCGTGCTGGTGTACACCGTCCTCTCCGCCACCGAC
CCCAAGCGCACCGCGCGCGACTCCTTCATCCCCGTGCTGGTGCCGCTGCCCATCGGCTTC
GCCGTGTTCATCGTGCACCTGGCCACCATACCCATCACCGGCACCGGCATCAACCCGGCC
AGGAGCCTCGGCGCCGCCGTCATGTACAACCAGCACAAGGCATGGAAGGACCACTGGATA
TTCTGGGTGGGGCCGCTCCTCGGCGCGACGGTGGCTGCGTTGTACCACCGGTTCGTGCTG
CGCGGCGAGGCCGCCAAGGCGCTGGGCTCGTTCAGGAGCACCGGCGCCGCCACCGCGCGA
ACCTAAATCACATACACGTGTGATCGGTCGAAGCTCCTTGATGCATAGTATGCTGGCTCT
AATTTGGTTGGTTAACTGTTCTCGCGATGTATGTCCGGTGTAATTATTACAGTGTTTTTT
TTAAACTTACTGATTATTACAGTGTTTTTTTTTGGAACTTATAATTATCACAGTGTTGAA
CAGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36930.1	291	4e-76	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi4g36601.1	291	4e-89
Arabidopsis v10	AT4G35100.1	280	2e-68	\| Symbols: PIP3, PIP3A, PIP2;7, SIMIP \| plasma membrane intrinsic protein 3 \| chr4:16708672-16709958 FORWARD LENGTH=280