barSeed - Barley Seed Development Database

Probe CUST_14540_PI390587928

Source Contig U35_13804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14540_PI390587928	Hv_44K_v2	TGTTGGTGGAACTTCATCAGTTAATGTTGCTACCATATATAGTCATCATGTTTGGAGTCG	1555	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252297.1	1638	2e-24	1570 - 1629	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC	MLOC_49182.1	1022	2e-24	720 - 779	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
JLOC1	JLOC1_31504.1	1010	8e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC33344	356	3e-25	51 - 110	100	60 / 60	minus	ABC33344
Harvest21	ABC00984	687	3e-25	11 - 70	100	60 / 60	minus
Harvest21	ABC00898	1665	3e-25	1556 - 1615	100	60 / 60	plus
Harvest35	U35_13804	1665	3e-25	1556 - 1615	100	60 / 60	plus
Harvest35	U35_13745	1852	8e-21	1586 - 1647	95	59 / 62	plus

Contig Sequence (1665 bp)

>U35_13804 1665 Hv_44K_v2
CCGCCGCAGGCTTTGACCCCATCGCCGCCCCCCCTCCTCTTCGTCTCCGGCCAGCCAGGT
AGTTAACAGCCATGGGCAAAGAAAAGATCCACATCAGCATTGTGGTCATTGGCCATGTCG
ACTCTGGCAAGTCAACCACGACTGGCCATCTCATCTACAAGCTTGGAGGCATTGACAAGC
GTGTGATTGAGAGGTTTGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTATG
CCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAGAGAGGTATCACCATTGATATTGCTC
TGTGGAAGTTTGAGACCACCAAGTACTCTTGCACTGTCATTGATGCTCCTGGTCACCGTG
ATTTCATCAAGAACATGATCACCGGGACCTCCCAGGCTGATTGTGCTGTGCTTATCATTG
ACTCCACCACTGGTGGTTTTGAGGCTGGTATCTCTAAGGATGGCCAGACACGTGAGCATG
CTCTCCTTGCTTTCACTCTTGGTGTGAAGCAGATGATTTGCTGCTGCAACAAGATGGACG
CCACCACTCCCAAGTACTCGAAGTCCCGTTACGATGAAATTGTCAAGGAAGTCTCTTCAT
ACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTG
AGGGTGATAACATGATCGAGAGGTCCTCCAACCTTGACTGGTACAAGGGCCCTACCCTGC
TTGAGGCGCTTGACCAGATCAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTCTTC
CCCTTCAGGATGTCTACAAGATTGGTGGCATTGGAACTGTGCCAGTGGGACGTGTTGAGA
CTGGAGTCATCAAGCCAGGCATGGTTGTCACCTTTGGCCCTACTGGCCTGACCACTGAGG
TCAAGTCTGTTGAGATGCACCATGAGTCTCTCCTGGAGGCGCTTCCTGGTGACAATGTTG
GCTTCAACGTCAAGAACGTGGCTGTCAAGGATCTCAAGCGTGGGTATGTTGCTTCCAACT
CCAAGGACGACCCTGCCAAGGAGGCTGCCAACTTCACTGCCCAGGTCATCATCATGAACC
ACCCTGGCCAGATCAGCAACGGTTATGCCCCTGTGCTGGACTGCCACACATCCCACATCG
CCGTCAAGTTCGCCGAGATCCAGACCAAGATCGACAGGCGGTCCGGCAAGGAGCTGGAGG
CAGCGCCCAAGTTTCTCAAGAATGGTGATGCTGGGTTCGTCAAGATGATTCCAACCAAGC
CCATGGTGGTGGAGACCTTTGCCCAGTACCCTCCTCTGGGTCGGTTTGCCGTGCGTGACA
TGAGGCAGACGGTTGCTGTGGGTGTGATCAAGAGCGTGGAGAAGAAGGAGCCGACCGGCG
CCAAGGTTACCAAGGCTGCGATCAAGAAGAAATGAGATGGTGTCAGGTTCTTTACCACAT
CTATGGTGGCGGTGGCGGTGTTTGGTGGTGGCGATAGTTGTTTTAGTCGCTTGGGTTATT
TGTGTCGAGAAGTGTTTGAACTGCTTAAAGCTCTGGTCATTGTATCGTTCGGTTGTGTTG
GTGGAACTTCATCAGTTAATGTTGCTACCATATATAGTCATCATGTTTGGAGTCGTTTTA
TAAAAAAAAAAAAAAAAATTCTGTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449