- Probe CUST_14106_PI390587928
- Source Contig U35_50075
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14106_PI390587928 | Hv_44K_v2 | TTGTGCGGGGCAGATGCCTGATTCCGTTCTTGGTTTGATGAATCGCAGCTGCTGGAGCTC | 258 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_32445.1 | 261 | 2e-24 | 29 - 88 | 100 | 60 / 60 | plus | ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00869 ABC34584 |
| JLOC1 | JLOC1_21160.1 | 261 | 8e-25 | 29 - 88 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00737 | 717 | 3e-25 | 259 - 318 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50075 | 472 | 3e-25 | 259 - 318 | 100 | 60 / 60 | plus |
Contig Sequence (472 bp)
>U35_50075 472 Hv_44K_v2 CGAGACTCCTCGTCGCCGGAGAAGCAGCAATGGCCGGAAGGAAGGGCGGCGAGAGGAAGA AGGCGGTGGCCCGGTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCT ACCTCAAGAAGGGCCGCTACGCGCAGCGCGTCGGCTCCGGGGCCCCCGTCTACCTAGCCG CCGTCCTCGAGTACCTCGCCGCCGAGGTAACCGCAGACCTTCTCGCTGTCCTCCAGCCTC CGTTCAGCCCTGTTCTTCTTGTGCGGGGCAGATGCCTGATTCCGTTCTTGGTTTGATGAA TCGCAGCTGCTGGAGCTCGCCGGCAACGCGGCCAAGGACAACAAGAAGACGCGCATCATC CCGCGACACCTGCTGCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCCGGC GTCACCATCGCCCACGGCGGCGTCATCCCCAACATCAACTCCGTGCTGCTCC
Homology of Contig U35_50075 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |