barSeed - Barley Seed Development Database

Probe CUST_13551_PI390587928

Source Contig U35_30647

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13551_PI390587928	Hv_44K_v2	AAGTGATGGTAGGTTATTTAGAAGGGCGGAGTTGAGGTTTGATTTCTGTTCATGGTTATT	535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250402.1	6765	2e-24	560 - 619	100	60 / 60	plus	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC	MLOC_67568.1	8628	2e-24	7872 - 7931	100	60 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67568.4	6839	2e-24	6311 - 6370	100	60 / 60	minus	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC	MLOC_67568.5	5944	2e-24	5176 - 5235	100	60 / 60	minus	ABC07669 ABC17988 ABC20754 ABC38921
MLOC	MLOC_67568.2	8046	2e-24	7278 - 7337	100	60 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67568.3	8388	2e-24	7781 - 7840	100	60 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67568.6	4656	2e-24	3678 - 3737	100	60 / 60	minus	ABC20754 ABC38921
JLOC1	JLOC1_44630.10	8006	8e-25	841 - 900	100	60 / 60	plus
JLOC1	JLOC1_44630.9	9225	8e-25	841 - 900	100	60 / 60	plus
JLOC1	JLOC1_44629.2	9904	8e-25	9005 - 9064	100	60 / 60	minus
JLOC1	JLOC1_44629.1	8563	8e-25	7664 - 7723	100	60 / 60	minus
JLOC1	JLOC1_44630.8	9333	8e-25	752 - 811	100	60 / 60	plus
JLOC1	JLOC1_44630.7	8813	8e-25	752 - 811	100	60 / 60	plus
JLOC1	JLOC1_44630.6	8182	8e-25	407 - 466	100	60 / 60	plus
JLOC1	JLOC1_44630.5	6818	8e-25	388 - 447	100	60 / 60	plus
JLOC1	JLOC1_44630.4	9550	8e-25	388 - 447	100	60 / 60	plus
JLOC1	JLOC1_44630.3	8548	8e-25	388 - 447	100	60 / 60	plus
JLOC1	JLOC1_44630.2	8905	8e-25	388 - 447	100	60 / 60	plus
JLOC1	JLOC1_44630.1	7324	8e-25	388 - 447	100	60 / 60	plus
Harvest21	ABC30653	658	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_30647	658	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_30647 658 Hv_44K_v2
CTTCGGAGCTCTCGTTTCGGGCCGCGCCTCCGCCCGAGTCGCCTCCTCGCGTCTCCGCGA
CTGTTTCCTTCCTCTTTCTTTCTCGTCCCTCATCTCGATTCGTTTCGAATCGCCTTTGAT
TTTTGCTCCGCTCCTCGCCGGCTTTGCTTCCTGTGCTCGCAGGGGATTCGGCCCGCTTCC
GGGGGTAGCGATCCGATCGATCGATCGATGGGGGATTCCATCGATTTCGCTTCCCGCGTC
TGATTCCGTGCGACCCTAGGTCAGTTTCTCGAACTCCATCGGTCGGGTCGGGTCGGGTCG
GTTCCTTGGTTCCGTCGCCTGCCTGCGTCCCTCGGTGATTTCAGAAGATTTGGATTCAAC
GGCCGTCGCCCGTGCGGTCTCCCGGTTCTAGGTTCCCGATCGAGTATGTATCAGTTAACA
CGAGGTCGATTCTTTGAGGCCCTCGTGGATTCTTACTACTTTACCAGCTGATCCCGCTTT
TGGTATGTGTGCTCTCATCTTGGATACACAAGCAAGATGGCGAGCGGTAGTTCTGAAGTG
ATGGTAGGTTATTTAGAAGGGCGGAGTTGAGGTTTGATTTCTGTTCATGGTTATTTTGAT
TGATTGATTGGTTGATTGGCTACGGTTCAGCGGTTACTCTGTTATGGTCAGATATTCT

Homology of Contig U35_30647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None