- Probe CUST_12185_PI390587928
- Source Contig U35_47169
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12185_PI390587928 | Hv_44K_v2 | CTCTAGTGATGAGAGTGACAGCGATAACTACAATAGTGAATCTGAAGAAAATATACATTG | 149 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252526.1 | 961 | 2e-24 | 771 - 830 | 100 | 60 / 60 | plus | ABC04049 ABC04051 ABC04053 ABC07251 ABC14922 |
| MLOC | MLOC_55578.1 | 131 | 2e-24 | 44 - 103 | 100 | 60 / 60 | plus | ABC04049 ABC04051 ABC04053 |
| MLOC | MLOC_26192.1 | 152 | 2e-24 | 40 - 99 | 100 | 60 / 60 | minus | ABC04049 ABC04051 ABC04053 |
| MLOC | AK354287 | 1839 | 7e-23 | 1663 - 1722 | 98 | 59 / 60 | plus | ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922 |
| MLOC | AK375595 | 2870 | 3e-21 | 2691 - 2750 | 97 | 58 / 60 | plus | ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922 ABC45569 |
| MLOC | MLOC_51947.1 | 803 | 3e-21 | 176 - 235 | 97 | 58 / 60 | minus | ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 |
| MLOC | MLOC_33500.1 | 193 | 3e-21 | 42 - 101 | 97 | 58 / 60 | plus | ABC04049 ABC04051 ABC04053 |
| JLOC1 | JLOC1_33225.1 | 750 | 2e-21 | 123 - 182 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC04051 | 1037 | 3e-25 | 849 - 908 | 100 | 60 / 60 | plus | ABC04051 |
| Harvest21 | ABC04053 | 1046 | 1e-23 | 113 - 172 | 98 | 59 / 60 | minus | ABC04053 |
| Harvest21 | ABC04050 | 664 | 6e-22 | 136 - 195 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_47169 | 716 | 3e-25 | 150 - 209 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_9654 | 647 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24668 | 1046 | 1e-23 | 875 - 934 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_15797 | 1136 | 6e-22 | 1015 - 1074 | 97 | 58 / 60 | plus |
Contig Sequence (716 bp)
>U35_47169 716 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAATACAACGGAATAGAAGATTGCAAATAAAATGTATACAGTA GCATATCACATCAAATACAATACATCATCCTACAGTCATCTATTGATTGCAAATAAAATG TATATTTTATTTCAGTAGCATATACAATACAATGTATATTTTCTTCAGATTCACTATTGT AGTTATCGCTGTCACTCTCATCACTAGAGTCTGAATACCTCCTCTTTGACCTATGCTTGC GCCTCCTGGCAGTCGCTCTCTGATTCACTATCAGATTCTAAGAAGAATAGCTTCTCCTCC TGTGCTTTACTTGCGGATGCGGGCGGCGGGGTAGCCGCACGAGGAGCAGGTGCTCTTCTG CAGGTGGAAGCTTATGTCCAGGCGATGGGTGCTGGCCAGCTCCTCCACCTCCTCTGGCCG CTCTAGCTATTGCACCTGCTACACATACGCAAAGAAGGGGAGGCACACGAACCGCATCAT CTCCTCCAACACCGCATGGATCCAGTGGATATGCCTTGATCCGTGGAGAGGAAAATAAGC ACGCGCTCCATCACAGATCCGTGGAGAGGAGACCTCCGTCGCCGGCATCCATCGCCGGCC GACCGGGCCCTCCGACCGNCAACTGCTCTCATAGGAGCTCCTTGACGAACACTCCATGGC GTGGGTCTTCTCCCTCCATGCTATGGGTCTCCAGATGCAGATCCTGTCTCGGCATG
Homology of Contig U35_47169 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |