barSeed - Barley Seed Development Database

Probe ABC04046

Source Contig ABC04046

barSeed

Links

Affymetrix Source Sequence (1274 bp)

>ABC04046 1274
GACCCAACCCAAACCCAAAGCCAAGTCGCACTCCTCCTCCTATCCCCACCCCTTTCCTCT
CCATCGCCCAGGCGGCCACCGGCCGGCGCCGCCGCCGCAGCCCGCGCGTCTCCGATTCGG
CGAATTTGGGGGCTGGGGAAAGAGGAGGAGCGGGCGACTTCTCTCTCTGGTGGTTGGATT
GGAGCTTCAGGACAAGGTTTTGAGCTTTTGTCTGTTTCGCTGGGATGGATGCCAAGAAGT
TCCTGCAGATGGTCGAAGACAAGAAGAAGAGACTCCTCGAGAAGAAGGAAGCCCCACTGA
AATGGCAGCAGAAACTCGAAGCAGCAATTAAGGCCACTGAAGAAAAGGAGAAGAAGCTCA
AGTCAAGAAAGCACAGGAGGCGAAGCTATTCTTCCTCGGAATCTGATAGTGAATCAGAGA
GCGACAGTGATCGTAAACACAGGAAGAGGAAGGACAGCAGAAGGCACAGGAAACATGGCC
ACTCTGACTCTGATGGTGCCAGGAGACGCAAGCATAGGTCAAAGAGGAGGCATTCAGACT
CAAGTGATGAGAGCGACAGCGATGACTACAATAGTGAATCTGAAGAAGAACGCCCAAGGA
AGAAGCACTCGCACAGGAGAAAGCATCGCCGACACTCTTCAAGGTCAGAGTCTGATGCTT
CAGACTACAGCAGCGACGATGATGAGCGAAGATCAACCAGGAAGGACCACTCTAGGAGCC
GGAGGCGCCGCCACCGATCCTCAGACGATGAATCCGAGGACAAGATCAGGTCGAGGCATA
GGAAGCGCCACAGATCAAGTGACGAAGACAAGCCATCAGATTGTGACAACCATAAGCGCT
ATAGGAGCCGCTCTATGTCCTTGGATGATGGTGCTGCTGGTGAGCCAGACAAGATGAATG
ATGGTAAGGGGTCTCACAAAAGCCGCCATCACCACCACCGCCGCCACCATCATGACCATC
ATGGCAAGTCTGCTGAACCCAGTGACGGGAAGCAACTCGTGTGAGTTGTTAACGCATCGG
AACCTGATTGGCATCATCACTGGACTATGTGGGAAGGTTTGCCCAGTTGGCTAGTTGCTG
AATGAAAGCGATGTATCTCTCATAATGTTACCGTCTCAGCTCTGCTGCGGATGCTGAAGC
CTGTACTTGTTGCTCTGAAACGTTTGGTAGCACTAATGTTATTTCCAGCATTTCCAGCAA
AAAAAAAAAAAAAAACTTGCTGATTCGGTGGTTAAACATGCCTGTTTCATTAGCTGCAAA
AAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374178	1215	0.0	28 - 1215	100	1188 / 1188	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.2	1307	0.0	1 - 1167	99	1151 / 1167	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.1	1341	6e-87	999 - 1201	96	195 / 203	None	ABC04046 ABC04049 ABC04052 ABC04053
AK354287	1839	1e-88	1487 - 1711	93	210 / 225	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
MLOC_58930.4	1448	5e-88	1233 - 1437	96	197 / 205	CUST_29601_PI390587928	ABC04046 ABC04051 ABC04052
AK252847.1	1812	1e-84	1445 - 1667	92	206 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
AK356638	1818	1e-84	1540 - 1762	92	206 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
MLOC_46749.1	796	1e-84	105 - 327	92	206 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
MLOC_51947.1	803	4e-84	187 - 407	92	205 / 222	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
AK375595	2870	2e-82	2519 - 2739	92	204 / 222	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922 ABC45569
MLOC_46749.2	380	1e-79	1 - 214	92	197 / 214	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053