barSeed - Barley Seed Development Database

Probe ABC04052

Source Contig ABC04052

barSeed

Links

Affymetrix Source Sequence (1270 bp)

>ABC04052 1270
CAACCCAACCCAAACCCAAAGCCAAGTCGCACTCCTCCTCCTATCCCCACCCCTTTCCTC
TCCATCGCCCAGGCGGCCACCGGCCGGCGCCGCCGCCGCCGCAGCCCGCGCGTCTCCGAT
TCGGCGAATTTGGGGGCTGGGGAAAGAGGAGGAGCGGGCGACTTCTCTCTCTGGTGGTTG
GATTGGAGCTTCAGGACAAGGTTTTGAGCTTTTGTCTGTTTCGCTGGGATGGATGCCAAG
AAGTTCCTGCAGATGGTCGAAGACAAGAAGAAGAGACTCCTCGAGAAGAAGGAAGCCCCA
CTGAAATGGCAGCAGAAACTCGAAGCAGCAATTAAGGCCACTGAAGAAAAGGAGAAGAAG
CTCAAGTCAAGAAAGCACAGGAGGCGAAGCTATTCTTCCTCGGAATCTGATAGTGAATCA
GAGAGCGACAGTGATCGTAAACACAGGAAGAGGAAGGACAGCAAAAGGCACAGGAAACAT
GGCCACTCTGACTCTGATGGTGCCAGGAGGCGCAAGCATAGGTCAAAGAGGAGGCATTCA
GACTCAAGTGATGAGAGTGACAGCGATGACTACAATAGTGAATCTGAAGAAGAACGCCCA
AGGAAGAAGCACTCGCACAGGAGAAAGCATCGCCGACACTCTTCAAGGTCAGAGTCTGAT
GCTTCAGACTACAGCAGCGACGATGATGAGCGAAGATCAACCAGGAAGGACCACTCTAGG
AGCCGGAGGCGCCGCCACCGATCCTCAGACGATGAATCCGAGGACAAGATCAGGTCGAGG
CATAGGAAGCGCCACAGATCAAGTGACGAAGACAAGCCATCAGATTCTGACAACCATAAG
CGCCATAGGAGCCGCTCTATGTCCTTGGATGATGGTGCTGCTGGTGAGCCAGACAAGATG
AATGATGGTAAGGGGTCTCACAAAAGCCGCCATCACCACCACCGCCGCCACCATCATGAC
CATCATGGCAAGTCTGCTGAACCCAGTGACGGGAAGCAACTCGTGTGAGTTGTTAACGCA
TCGGAACCTGATTGGCATCATCACTGGACTATGTGGGAAGGTTTGCCCAGTTGGCTAGTT
GCTGAATGAAAGCGATGTATCTCTCATAATGTTACCGTCTCAGCTCTGCTGCGGATGCTG
AAGCCTGTACTTGTTGCTCTGAAACGTTTGGTAGCACTAATGTTATTTCCAGCATTTCCT
CTGTTGGGATATGGTTTGCTTGCTGATTCGGTGGTTAAACATGCCTGTTTCATTAAAAAA
AAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374178	1215	0.0	26 - 1215	99	1185 / 1193	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.2	1307	0.0	1 - 1169	99	1161 / 1169	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.1	1341	1e-93	999 - 1203	98	200 / 205	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.4	1448	1e-94	1233 - 1439	98	202 / 207	CUST_29601_PI390587928	ABC04046 ABC04051 ABC04052
AK354287	1839	1e-93	1487 - 1711	95	213 / 225	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
AK252847.1	1812	1e-89	1445 - 1667	94	209 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
AK356638	1818	1e-89	1540 - 1762	94	209 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
MLOC_46749.1	796	1e-89	105 - 327	94	209 / 223	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
MLOC_51947.1	803	4e-89	187 - 407	94	208 / 222	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
AK375595	2870	2e-87	2519 - 2739	93	207 / 222	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922 ABC45569
MLOC_46749.2	380	1e-84	1 - 214	93	200 / 214	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053