barSeed - Barley Seed Development Database

Probe ABC04053

Source Contig ABC04053

barSeed

Links

Affymetrix Source Sequence (1046 bp)

>ABC04053 1046
GAAACCCATCCACATGTTCCAGCCGCCATCGTCCCCACTTCGGATCCAGAAGGCAGGCCA
TGGCGGCGGCTAGATCCGTGCCGGGAGAGGATCTACATGAGCAGTTTGCGGTCGGAGGGC
CTGGTCGGCCGGCGATGGATGCCGGCGACGGAGGTCTCCTCTCCACGGATCTTTGATGGA
GCGGGTGCTTATTTTCCTCTCCACGGATCAAGGTGCCTCCTAACTCCCATCCCTCCTCTC
CCTACGATTCATTTCGTTCTCCTCATGCCCTGTTCCTCTTTTTATGTTCGTGCTGCACGC
ATATCCACTGGATCCATGCGCTTAGTGCTTCCTGAGGAGAATGCGACCATGGCGGAGGAA
GACCGGCGGAACAGGAGCGGGCTCGTCCCGCGGGAGGCGGAGGAAGACCTCCTCCAGGAG
CTCGTGCGGCAGCGACGGTGCCGTTGTCGATGGCGGCGGCGGCGATGGCTTGGAGGCTAG
GGTTTCTGGTGGGGTGGGGGATTCATCCGAGGAGAAAGGAGCCTCGCTCACGGATTCTTC
TCGGTTCAACCAGCGAACACTCCGACAGGAGGAGAAGGCTTGACGCGCCGTCGGCACTGA
CTCTAGCGCCCATGGATCCGGCTACCCGCTCATCTGAGCTTCCACGTGCAGAAGAGCACC
TGCTCCTCGTGCGGCTACCCCGCCGCCCGCATCCGCAAGTAAAGCACAGGAGGAGAAGCT
ATTCTTCCTCAGAATCTGATAGTGAATCAGAGAGCAACAGTGATCGTAAACACACAGGAA
GAGGAAGGACCGCAAAAGGCACAGGAAACATGGCCACTCTGACTTTTGATGGTGCCAGGA
GGCGCAAGCATAGGTCAAAGAGGAGGTATTCAGACTCTAGTGATGAGAGTGACAGCGACA
ACTACAATAGTGAATCTGAAGAAAATATACATTGTATTGTATATGCTACTGAAGTAAAAT
ATACATTTTATTTGCAATCAATAGATGACTATGCAGGATGATGTATTGTATTTGATGTGA
TATGCTACTAAAATAAAATATACATT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354287	1839	5e-107	168 - 387	99	218 / 221	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
AK252847.1	1812	3e-54	581 - 714	96	128 / 134	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
MLOC_46749.1	796	3e-154	1 - 325	97	317 / 327	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
MLOC_51947.1	803	3e-149	64 - 405	95	327 / 346	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
AK375595	2870	7e-91	21 - 233	95	203 / 213	CUST_12185_PI390587928	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922 ABC45569
MLOC_26908.1	614	3e-139	4 - 350	93	321 / 347	None	ABC04053 ABC14922
AK356638	1818	3e-54	678 - 811	96	128 / 134	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053 ABC14922
MLOC_32228.1	297	2e-121	1 - 297	93	277 / 297	None	ABC04053
MLOC_5592.2	251	8e-110	1 - 251	95	241 / 253	None	ABC04053
MLOC_49871.1	228	1e-103	1 - 205	100	205 / 205	None	ABC04053 ABC14922
MLOC_9251.1	217	2e-101	1 - 217	98	212 / 217	None	ABC04053 ABC14922
MLOC_47582.1	624	4e-98	78 - 299	96	213 / 222	None	ABC04053
MLOC_41140.1	242	1e-97	1 - 242	93	227 / 243	None	ABC04053
AK252526.1	961	3e-94	729 - 925	98	194 / 197	CUST_12185_PI390587928	ABC04049 ABC04051 ABC04053 ABC07251 ABC14922
MLOC_58930.1	1341	1e-93	574 - 797	94	215 / 228	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_58930.2	1307	1e-93	574 - 797	94	215 / 228	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_46749.2	380	4e-93	1 - 212	96	205 / 214	None	ABC04046 ABC04049 ABC04051 ABC04052 ABC04053
MLOC_29258.1	375	7e-56	233 - 375	94	135 / 143	None	ABC04053 ABC14922
MLOC_1641.1	307	2e-91	1 - 229	93	217 / 233	None	ABC04053 ABC14922
MLOC_33500.1	193	2e-90	1 - 193	98	189 / 193	CUST_12185_PI390587928	ABC04049 ABC04051 ABC04053
MLOC_1641.2	377	2e-90	1 - 227	93	215 / 231	None	ABC04053 ABC14922
AK374178	1215	1e-88	390 - 613	93	212 / 228	None	ABC04046 ABC04049 ABC04052 ABC04053
MLOC_33826.1	202	1e-88	1 - 202	96	194 / 202	None	ABC04053 ABC14922
MLOC_50724.1	3349	4e-83	4 - 250	89	221 / 247	None	ABC04053 ABC14922 ABC49840
MLOC_50725.1	3125	4e-83	4 - 250	89	221 / 247	None	ABC04053 ABC14922 ABC49840
MLOC_826.1	208	1e-82	1 - 186	97	180 / 186	None	ABC04053 ABC14922
MLOC_50725.3	3402	7e-81	1 - 237	90	213 / 237	None	ABC04053 ABC14922 ABC49840
MLOC_50724.2	4429	7e-81	1 - 237	90	213 / 237	None	ABC04053 ABC14922
MLOC_50725.2	2801	7e-81	1 - 237	90	213 / 237	None	ABC04053 ABC14922
MLOC_78467.1	1195	5e-77	277 - 493	91	197 / 217	None	ABC04053 ABC07248 ABC07251 ABC46065
MLOC_78467.2	2451	5e-77	277 - 493	91	197 / 217	None	ABC04053 ABC07248 ABC07251 ABC46065
MLOC_78465.1	1021	5e-77	277 - 493	91	197 / 217	None	ABC04053 ABC07248 ABC07251 ABC46065
MLOC_50724.3	2818	7e-76	1 - 228	89	204 / 228	None	ABC04053
MLOC_50725.4	2425	7e-76	1 - 228	89	204 / 228	None	ABC04053
MLOC_78465.2	1105	2e-75	192 - 408	90	196 / 217	CUST_8180_PI390587928	ABC04053 ABC07248 ABC07251 ABC46065
MLOC_50724.4	3398	2e-75	1 - 227	89	203 / 227	None	ABC04053 ABC49840
MLOC_50725.5	4464	2e-75	1 - 227	89	203 / 227	None	ABC04053 ABC49840
MLOC_50724.5	3111	2e-75	1 - 227	89	203 / 227	None	ABC04053 ABC49840
MLOC_50725.7	3251	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.8	3022	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.9	2715	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50724.6	3364	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.6	2496	1e-73	1 - 224	89	200 / 224	None	ABC04053
MLOC_50724.7	4678	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.10	4339	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.11	3552	1e-73	1 - 224	89	200 / 224	None	ABC04053 ABC49840
MLOC_50725.12	3014	1e-72	1 - 222	89	198 / 222	None	ABC04053 ABC49840
MLOC_50724.8	2330	1e-72	1 - 222	89	198 / 222	None	ABC04053 ABC49840
MLOC_50725.13	2881	1e-72	1 - 222	89	198 / 222	None	ABC04053 ABC49840
MLOC_50725.14	2680	1e-72	1 - 222	89	198 / 222	None	ABC04053 ABC49840
MLOC_50724.9	2855	1e-72	1 - 222	89	198 / 222	None	ABC04053 ABC49840
MLOC_26192.1	152	1e-67	1 - 152	97	149 / 153	CUST_12185_PI390587928	ABC04049 ABC04051 ABC04053
MLOC_50725.15	3003	5e-67	1 - 212	89	188 / 212	None	ABC04053 ABC49840
MLOC_50725.16	2483	5e-67	1 - 212	89	188 / 212	None	ABC04053
AK371724	2350	7e-61	4 - 191	89	168 / 188	None	ABC04053 ABC49840
MLOC_31125.1	250	9e-60	1 - 160	93	149 / 160	None	ABC04053 ABC14922
MLOC_55578.1	131	3e-59	1 - 131	98	129 / 131	CUST_12185_PI390587928	ABC04049 ABC04051 ABC04053
MLOC_1746.1	175	2e-56	35 - 173	96	133 / 139	None	ABC04053 ABC14922