barSeed - Barley Seed Development Database

Probe ABC25578

Source Contig ABC25578

barSeed

Links

Affymetrix Source Sequence (519 bp)

>ABC25578 519
CGCCGTGCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCACTAAGCG
CACAGTGGAGAGCACCGCCCCCTACGTGGCCCTCGGCATCCTCTACGCCTACTTGCTCTA
CCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCCCGGA
GTTGCCTGGCATTGTGAGGATGTTTGCGAGCGAGATGACCGTCGCCTCCGCCTGGATCCA
CCTCCTTGCCGTCGACCTCTTCGCCGCAAGACAGGTGTACCATGATGGCATCAAGAACAA
CATCGAGACCAGGCATTCGGTTTCCCTGTGCCTGCTCTTCTGCCCCATCGGGATCGCCGC
TCACGCGCTCACTAAGGTACTGGCGGGTTCCACAGGTCGATCGCACTGACGACGACCACC
AATTACGTGTAGGCAGGCTCACCTTGTTTAGATGGCTCAGATTGTGAGATTCAGATATAT
GAATAAAATTGATTTGATGCANAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_49356.2	5366	0.0	100 - 548	100	449 / 449	CUST_6215_PI390587928 CUST_30790_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_49356.1	3290	0.0	106 - 554	100	449 / 449	CUST_30790_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_49355.1	555	3e-171	1 - 326	100	326 / 326	None	ABC04112 ABC25578
MLOC_47217.1	461	1e-140	1 - 313	96	299 / 313	None	ABC25578
MLOC_49356.4	1304	1e-119	16 - 248	100	233 / 233	CUST_9436_PI390587928 CUST_30790_PI390587928	ABC04112 ABC25578
MLOC_49356.5	2226	1e-119	3 - 235	100	233 / 233	CUST_30790_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578
MLOC_49356.3	4613	1e-119	97 - 329	100	233 / 233	CUST_9436_PI390587928 CUST_6215_PI390587928 CUST_30790_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_25941.1	305	2e-112	55 - 304	96	240 / 250	None	ABC25578