- Probe CUST_30790_PI390587928
- Source Contig U35_9088
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30790_PI390587928 | Hv_44K_v2 | CAGGCTCACCTTGTTTAGATGGCTCAGATTGTGAGATTCAGATATATGAATAAAATTGAT | 433 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.043 | 2.829 | 1.046 | 0.848 | 0.494 | 0.555 |
| Raw | 1398.370 | 2108.694 | 670.193 | 869.875 | 174.736 | 211.315 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_49356.4 | 1304 | 2e-24 | 181 - 240 | 100 | 60 / 60 | plus | ABC04112 ABC25578 |
| MLOC | MLOC_49356.5 | 2226 | 2e-24 | 168 - 227 | 100 | 60 / 60 | plus | ABC04112 ABC25578 |
| MLOC | MLOC_49356.3 | 4613 | 2e-24 | 262 - 321 | 100 | 60 / 60 | plus | ABC04112 ABC25578 ABC37767 |
| MLOC | MLOC_49356.2 | 5366 | 2e-24 | 481 - 540 | 100 | 60 / 60 | plus | ABC04112 ABC25578 ABC37767 |
| MLOC | MLOC_49356.1 | 3290 | 2e-24 | 487 - 546 | 100 | 60 / 60 | plus | ABC04112 ABC25578 ABC37767 |
| JLOC1 | JLOC1_31600.2 | 4573 | 8e-25 | 4198 - 4257 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_31600.1 | 3197 | 8e-25 | 2822 - 2881 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_31599.1 | 2496 | 8e-25 | 487 - 546 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25578 | 519 | 3e-25 | 434 - 493 | 100 | 60 / 60 | plus | ABC25578 |
| Harvest35 | U35_9088 | 519 | 3e-25 | 434 - 493 | 100 | 60 / 60 | plus |
Contig Sequence (519 bp)
>U35_9088 519 Hv_44K_v2 CGCCGTGCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCACTAAGCG CACAGTGGAGAGCACCGCCCCCTACGTGGCCCTCGGCATCCTCTACGCCTACTTGCTCTA CCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCCCGGA GTTGCCTGGCATTGTGAGGATGTTTGCGAGCGAGATGACCGTCGCCTCCGCCTGGATCCA CCTCCTTGCCGTCGACCTCTTCGCCGCAAGACAGGTGTACCATGATGGCATCAAGAACAA CATCGAGACCAGGCATTCGGTTTCCCTGTGCCTGCTCTTCTGCCCCATCGGGATCGCCGC TCACGCGCTCACTAAGGTACTGGCGGGTTCCACAGGTCGATCGCACTGACGACGACCACC AATTACGTGTAGGCAGGCTCACCTTGTTTAGATGGCTCAGATTGTGAGATTCAGATATAT GAATAAAATTGATTTGATGCACCAAAAAAAAAAAAAAAA
Homology of Contig U35_9088 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g03750.1 | 229 | 8e-73 | protein|expressed protein |
| Brachypodium v1_2 | Bradi2g01990.1 | 233 | 2e-79 | |
| Arabidopsis v10 | AT1G67080.1 | 220 | 8e-54 | | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220 |