barSeed - Barley Seed Development Database

Probe ABC04112

Source Contig ABC04112

barSeed

Links

Affymetrix Source Sequence (1239 bp)

>ABC04112 1239
GGAACAAAGGAAAAAAAAAAGGCAGAGAGGGCCCTCTGCTCCTCCCATCCTCCGTCAAAG
CCGCAAGAAGCAGAGGAGGGCAAGGCGGCGGAGCAGAGCAGAGCAGAGGAAGATGGCGCC
ACCGCGCCCGCGCCCGCAGCCGGCGCTGCTCCTGCTGCTCCTCGTCTCCCTGCTGGCCGC
CTCCGCGCCCCGCCGCGCCGACGCCTGGGGCAAGGAGGGCCACATCATGGTCTGCAAGGT
CGCCGAGAGGTACCTGTCGGAGGACGCGGCGGCGGCGGTGCAGGAGCTGCTGCCGGAGTC
GGCCGGCGGGGAGCTGTCGACGGTGTGCCCGTGGGCGGACACGATGCGGTTCCGGTACCA
CTGGGCCAGCCCGCTCCACTACGCCAACACCCCCAACGTCTGCAACTTCGACTTCTCACG
GGACTGCCACAACTCCCGCGGGGAGCAGGGGATGTGCGTCGTCGGGGCCATCAACAACTA
CACGGACCAGCTCTACACCTACGGGGACTCATCATCAAAGAGCTCATACAACCTGACGGA
GAGCCTCATGTTCCTGGCGCACTTCGTGGGGGACGTGCACCAGCCGCTGCACGTCGGCTA
CGAGGAGGACGAGGGCGGCAACACCATCACGGTGCACTGGTACCGCAGGAAGGCCAACCT
CCACCACGTGTGGGATGTCAGCATCATCGACACGGTCATGAAGGACTTCTACAACAAGAG
CCTCGACACCATGGTCGACGCCCTCCAGACCAACCTCACCGAAGGTTGGTCCGACGATGT
CGGTCGCTGGGAGAGCTGCGCCAACAAGAAGGCGACCTGCGCAAACGACTACGCGATCGA
GAGCATAAACCTGGCGTGCAACTACGCATACAAAGATGTGGTGCAGAACATTACTCTGGG
AGATGATTATTACCTCACCCGGTACCCGGTTGTGGAGAAGAGACTGGCACAGGCCGGCGT
CAGACTCGCCTTGATACTCAACAGGATATTTGACAAGAAGAAAGCAGATGCTATGCCGTT
GTACATACAGTAAAATAGCTATACTTGTACAAACATAGATATACTGATGACTGGAAGGTA
TTATTGTAGCTACCGCACCACGCCAGTTTGATCAATTGCCGCTTCAATAGGTGATATGTA
ATAAGAATCAAACAACCTTGGCACACCATTCAGAAATTCAACTGTTGTAAAGTTCCATAA
TATACTACTCCCTCCGTTTCACAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364415	1241	0.0	20 - 1240	100	1221 / 1221	CUST_9436_PI390587928	ABC04112
MLOC_49356.3	4613	0.0	678 - 1486	99	808 / 809	CUST_30790_PI390587928 CUST_6215_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_49356.5	2226	0.0	584 - 1282	99	697 / 699	CUST_30790_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578
MLOC_49356.6	3708	0.0	1 - 678	100	678 / 678	CUST_6215_PI390587928	ABC04112 ABC37767
MLOC_39905.1	561	0.0	17 - 435	100	419 / 419	None	ABC04112
MLOC_49356.4	1304	4e-79	1102 - 1262	100	161 / 161	CUST_9436_PI390587928 CUST_30790_PI390587928	ABC04112 ABC25578
MLOC_49356.2	5366	1e-68	1899 - 2040	100	142 / 142	CUST_30790_PI390587928 CUST_6215_PI390587928 CUST_9436_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_49356.1	3290	1e-68	1905 - 2046	100	142 / 142	CUST_9436_PI390587928 CUST_30790_PI390587928	ABC04112 ABC25578 ABC37767
MLOC_49355.1	555	1e-119	322 - 555	100	234 / 234	None	ABC04112 ABC25578