barSeed - Barley Seed Development Database

Probe CUST_9436_PI390587928

Source Contig U35_1098

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9436_PI390587928	Hv_44K_v2	AGGTGATATGTAATAAGAATCAAACAACCTTGGCACACCATTCAGAAATTCAACTGTTGT	1128	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.777	3.607	1.225	0.773	0.316	0.385
Raw	171.275	132.674	38.529	39.763	4.450	6.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364415	1241	2e-24	1147 - 1206	100	60 / 60	plus	ABC04112
MLOC	MLOC_49356.4	1304	2e-24	633 - 692	100	60 / 60	minus	ABC04112 ABC25578
MLOC	MLOC_49356.5	2226	2e-24	620 - 679	100	60 / 60	minus	ABC04112 ABC25578
MLOC	MLOC_49356.3	4613	2e-24	714 - 773	100	60 / 60	minus	ABC04112 ABC25578 ABC37767
MLOC	MLOC_49356.2	5366	2e-24	933 - 992	100	60 / 60	minus	ABC04112 ABC25578 ABC37767
MLOC	MLOC_49356.1	3290	2e-24	939 - 998	100	60 / 60	minus	ABC04112 ABC25578 ABC37767
JLOC1	JLOC1_31600.2	4573	8e-25	3746 - 3805	100	60 / 60	plus
JLOC1	JLOC1_31600.1	3197	8e-25	2370 - 2429	100	60 / 60	plus
JLOC1	JLOC1_31599.1	2496	8e-25	939 - 998	100	60 / 60	minus
Harvest21	ABC04112	1239	3e-25	1129 - 1188	100	60 / 60	plus	ABC04112
Harvest35	U35_1098	1246	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_1098 1246 Hv_44K_v2
GGAACAAAGGAAAAAAAAAAGGCAGAGAGGGCCCTCTGCTCCTCCCATCCTCCGTCAAAG
CCGCAAGAAGCAGAGGAGGGCAAGGCGGCGGAGCAGAGCAGAGCAGAGGAAGATGGCGCC
ACCGCGCCCGCGCCCGCAGCCGGCGCTGCTCCTGCTGCTCCTCGTCTCCCTGCTGGCCGC
CTCCGCGCCCCGCCGCGCCGACGCCTGGGGCAAGGAGGGCCACATCATGGTCTGCAAGGT
CGCCGAGAGGTACCTGTCGGAGGACGCGGCGGCGGCGGTGCAGGAGCTGCTGCCGGAGTC
GGCCGGCGGGGAGCTGTCGACGGTGTGCCCGTGGGCGGACACGATGCGGTTCCGGTACCA
CTGGGCCAGCCCGCTCCACTACGCCAACACCCCCAACGTCTGCAACTTCGACTTCTCACG
GGACTGCCACAACTCCCGCGGGGAGCAGGGGATGTGCGTCGTCGGGGCCATCAACAACTA
CACGGACCAGCTCTACACCTACGGGGACTCATCATCAAAGAGCTCATACAACCTGACGGA
GAGCCTCATGTTCCTGGCGCACTTCGTGGGGGACGTGCACCAGCCGCTGCACGTCGGCTA
CGAGGAGGACGAGGGCGGCAACACCATCACGGTGCACTGGTACCGCAGGAAGGCCAACCT
CCACCACGTGTGGGATGTCAGCATCATCGACACGGTCATGAAGGACTTCTACAACAAGAG
CCTCGACACCATGGTCGACGCCCTCCAGACCAACCTCACCGAAGGTTGGTCCGACGATGT
CGGTCGCTGGGAGAGCTGCGCCAACAAGAAGGCGACCTGCGCAAACGACTACGCGATCGA
GAGCATAAACCTGGCGTGCAACTACGCATACAAAGATGTGGTGCAGAACATTACTCTGGG
AGATGATTATTACCTCACCCGGTACCCGGTTGTGGAGAAGAGACTGGCACAGGCCGGCGT
CAGACTCGCCTTGATACTCAACAGGATATTTGACAAGAAGAAAGCAGATGCTATGCCGTT
GTACATACAGTAAAATAGCTATACTTGTACAAACATAGATATACTGATGACTGGAAGGTA
TTATTGTAGCTACCGCACCACGCCAGTTTGATCAATTGCCGCTTCAATAGGTGATATGTA
ATAAGAATCAAACAACCTTGGCACACCATTCAGAAATTCAACTGTTGTAAAGTTCCATAA
TATACTAAAAAAAAAAATCCCTCCGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03730.1	309	1e-168	protein\|nuclease PA3, putative, expressed
Brachypodium v1_2	Bradi2g01980.1	299	0.0
Arabidopsis v10	AT1G68290.1	290	5e-115	\| Symbols: ENDO 2 \| endonuclease 2 \| chr1:25596718-25598264 FORWARD LENGTH=290