barSeed - Barley Seed Development Database

Probe ABC21572

Source Contig ABC21572

barSeed

Links

Affymetrix Source Sequence (931 bp)

>ABC21572 931
GAAGGAAGAGGGCTCGGATGATTGGCGGAGGAGATTACCGGAGCTCGCGAGGAGGCTCGA
GGAAATCTTGTTTATGAAATACCCAAGCAAGAGGGAGTACTACTGTATGATGCGGGCACC
AATTGAGCCACAATTGCAGTATGCTATCAAGACCTTGAGTGCACGGAACCAACAAAATCA
ACAAAACCTAGCCTCGTCAAGACAGATAGCATCTTCCCCTGGCCATGGGACGATGATTCT
GACACCTGGTATCACGCAAGGCGCAAGTGAAAATTCTAGAATGTCTTATGTGACAGGCAA
TATTGGCCCTTCCTCGTCTAGTGCAGACATGGTTCCTCCGAACACCAACATGGGTACCTT
GCTGCCAGGGGAAGCTCCTGATGAGCATGTGAACACACTTCTATCTCTGGGGATGAACCC
TACACAGCATGATCACCCCAGAGCCAACAACAACAACCTCATGATAGACACAGTGGACAT
ACCTGCAACCAACAGGCTCTTGAAATCGCGTGCACCTGTGAAGGAAGTCCGAAATGAGCC
AAAGTTTAGCTGTCCAGTCTGCATGAATGAGCTGGTCGATCCATCATCAACCATATGTGG
CCACATCTTCTGCCAGAAGTGCATCCAGGCCTCCATCCAGGCTCAGAGCAAGTGTCCGAC
CTGCCGTAGGACGTTAACCGTGAATTGTTTCCACCGCGTCTACCTCCCGACGATGGACTG
ACCTGATCCACCCTGTTTTATTTACTCTTTTACCCCCGGGTGCTGCTGATCAGATGGTAA
CATTTGAGAAGCAGGTTTGGTGACTGACGGCGTTAGCAGGGATATGGACTGTCATTTGCT
TTTCTTTAAAGTCTTCTTAAGGCATTTGTATTATTTACCTGTATAAGGTATATTTACTTC
NCGTTGTGAGTTGTATTNCTNTTGTATATTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369368	1309	0.0	325 - 1254	99	926 / 931	CUST_23279_PI390587928	ABC03650 ABC21572
MLOC_65389.3	1110	0.0	129 - 1058	98	911 / 931	CUST_23279_PI390587928	ABC21572
MLOC_65389.1	1400	0.0	419 - 1348	98	911 / 931	CUST_23279_PI390587928	ABC21572
MLOC_65389.4	994	0.0	449 - 994	97	532 / 547	CUST_23279_PI390587928	ABC21572
MLOC_68145.6	3152	0.0	2090 - 2780	85	588 / 693	CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_65389.2	947	0.0	361 - 729	99	368 / 369	None	ABC21572
MLOC_68145.3	3182	1e-172	2126 - 2801	83	575 / 693	CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_68145.5	3145	1e-172	2122 - 2797	83	575 / 693	CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_68145.8	2304	1e-172	1263 - 1938	83	575 / 693	CUST_25808_PI390587928	ABC03651 ABC21572
MLOC_68145.2	3220	1e-172	2146 - 2821	83	575 / 693	CUST_27156_PI390587928 CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_68145.1	3691	5e-67	2980 - 3310	81	269 / 333	CUST_27156_PI390587928 CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_68145.7	1829	3e-124	1264 - 1628	89	325 / 366	CUST_25808_PI390587928	ABC03651 ABC21572
MLOC_68145.4	3249	5e-67	2523 - 2853	81	269 / 333	CUST_25808_PI390587928 CUST_7646_PI390587928	ABC03650 ABC03651 ABC21572
MLOC_68145.9	970	5e-67	274 - 604	81	269 / 333	None	ABC03651 ABC21572
AK248200.1	1384	2e-55	685 - 1044	79	285 / 363	None	ABC03650 ABC03651 ABC03652 ABC21572
AK355442	1424	2e-55	592 - 951	79	285 / 363	CUST_7647_PI390587928 CUST_32284_PI390587928	ABC03650 ABC03651 ABC03652 ABC21572
MLOC_15192.1	2673	2e-55	1851 - 2210	79	285 / 363	CUST_7647_PI390587928	ABC03650 ABC03651 ABC03652 ABC21572