barSeed - Barley Seed Development Database

Probe CUST_7646_PI390587928

Source Contig U35_1388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7646_PI390587928	Hv_44K_v2	GAAATTTCTAGAATGTCTTACGTGACAGGCAACATTGGCCCTTTGTCGTCTGGTGCAAAC	481	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.061	0.065	0.394	1.923	2.322	3.281
Raw	7.573	12.289	72.773	556.737	237.399	367.004

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68145.1	3691	2e-24	708 - 767	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.3	3182	2e-24	686 - 745	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.6	3152	2e-24	652 - 711	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.5	3145	2e-24	684 - 743	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.4	3249	2e-24	686 - 745	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.2	3220	2e-24	708 - 767	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	AK251098.1	1274	7e-23	498 - 557	98	59 / 60	plus	ABC03650 ABC03651
JLOC1	JLOC1_45057.3	3199	8e-25	2436 - 2495	100	60 / 60	plus
JLOC1	JLOC1_45057.2	3202	8e-25	2436 - 2495	100	60 / 60	plus
JLOC1	JLOC1_45057.1	3187	8e-25	2421 - 2480	100	60 / 60	plus
Harvest21	ABC03651	1255	3e-25	482 - 541	100	60 / 60	plus	ABC03651
Harvest35	U35_1388	1255	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_1388 1255 Hv_44K_v2
AGGCTCAGGTAGTCCGCCATTGGTCTAGGACGGTGTAAGGCTCGGCTGGCTGGCTGTGAA
GATTGGACCCATGAATCAGGTCGGTGGTGCTGGCGACGGGATACCACCGCGGCAAAATCA
GATGCGGGATGTGGTGGACCGTGCCGCAGGGGTTGATCCCAAGTTCATGGTGCTGCGCAA
CAATACTCGACAGAAGATATTCACGTATATAGAAAGGAAGCAACTATCGGCTATCTGGCG
GCGGCGGCTGCCGGACCTCACGAGGCGGCTTGAGGGAATCTTGTTTAGAGAATACCCAAA
CAAGAGGGAGTACTACAATATGACGAAGGGGCCGATTGAGCCCACCTTGCAGTTTGCCAT
GAAGCTCTCGAGTGTTCAGAACCGGCGACAAGAACAGAACCGACAATTGTCAAGGCAGAT
AACATGTTCCCCTCACTATGGGACAATGATTGTGACACCTGGTATCACACAAGGCGCAAG
TGAAATTTCTAGAATGTCTTACGTGACAGGCAACATTGGCCCTTTGTCGTCTGGTGCAAA
CATGGTTCGGCAGAACGCCAGCATGGGTACCTTGCTTCCAGAAGAAGCTCCTGATGAACA
TGTGAACACAGTGCTGTCACTGGGGATGAACCCTACACACCATGATCGCCCCAGAGCATG
CAGCAACAACCTCGTGATAGACACAGTGGAAACATCTGAAACCAACAGACGCTTGGCACC
CCGTGCACCAGTGAAGGAGGTCGCAAAGAAACCAAAGTTCAGCTGCCCAGTCTGCTGGAA
CGAGCTGACCAATGCGTCATCGACCATCTGCGGCCACATCTTCTGCCAGAAGTGCATCAA
GGCCGCCATCCAGGCTCAGAACAAGTGCCCGACCTGCCGTAAGACGCTTACCATGAAGGG
GTTCCACCCTGTCCACCTTCCGACGATGGACTGAAGTGATCCAGCCATTCTGGGCGCAGC
AGTGCCTCAGGCACCCGTGTTCTTCTCCTCGCTGGGATTGCGGCGATTCTATCTGCGCAG
GGTTGCCATTACCATTCAGTTTCCTGCCCCAGATGTGTGACTGGTAATGTCGTGATTCGC
AGTTTTTGAGATGCCGTTACCAACCAGTATGTATCCCTAGCGCTAAATAATACCGTACTC
TGTCCGTCTGGGTTTAATAAGGTATGTTGGTTTTGTTGTAAGTCAAACCGGTTTGAGTTC
TATGGATACAAATATCAACATTCGCAATACCAAATAAAATATCACCAGTTCTACC

Homology of Contig U35_1388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g03330.1	1707	1e-58
Arabidopsis v10	None