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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27156_PI390587928Hv_44K_v2GTTGTAAGTCAAACCGGTTTGAGTTCTATGGATACAAATATCAACATTCGCAATACCAAA492GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0270.0540.4481.9232.4173.820
Raw 8.72326.689204.7411318.770604.2221043.324



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_68145.136912e-2415 - 7410060 / 60minus ABC03650 ABC03651 ABC21572
MLOCMLOC_68145.232202e-2415 - 7410060 / 60minus ABC03650 ABC03651 ABC21572
MLOCAK251098.112747e-231191 - 12509859 / 60plus ABC03650 ABC03651
JLOC1JLOC1_45057.331998e-253126 - 318510060 / 60plus
JLOC1JLOC1_45057.232028e-253129 - 318810060 / 60plus
JLOC1JLOC1_45057.131878e-253114 - 317310060 / 60plus
Harvest21ABC439415903e-25493 - 55210060 / 60plus
Harvest21ABC0365112553e-251175 - 123410060 / 60plusABC03651
Harvest35U35_452705903e-25493 - 55210060 / 60plus
Harvest35U35_138812553e-251175 - 123410060 / 60plus



Contig Sequence (590 bp)

>U35_45270 590 Hv_44K_v2
ACAGTGGAAACATCTGAAACCAACAGACGCTTGGCACCCCGTGCACCAGTGAAGGAGGTC
GCAAAGAAACCAAAGTTCAGCTGCCCAGTCTGCTGGAACGAGCTGACCAATGCGTCATCG
ACCATCTGCGGCCACATCTTCTGCCAGAAGTGCATCAAGGCCGCCATCCAGGCTCAGAAC
AAGTGCCCGACCTGCCGTAAGACGCTTACCATGAAGGGGTTCCACCCTGTCCACCTTCCG
ACGATGGACTGAAGTGATCCAGCCATTCTGGGCGCAGCAGTGCCTCAGGCACCCGTGTTC
TTCTCCTCGCTGGGATTGCGGCGATTCTATCTGCGCAGGGTTGCCATTACCATTCAGTTT
CCTGCCCCAGATGTGTGACTGGTAATGTCGTGATTCGCAGTTTTTGAGATGCCGTTACCA
ACCAGTATGTATCCCTAGCGCTAAATAATACCGTACTCTGTCCGTCTGGGTTTAATAAGG
TATGTTGGTTTTGTTGTAAGTCAAACCGGTTTGAGTTCTATGGATACAAATATCAACATT
CGCAATACCAAATAAAATATCACCAGTTCTACCAAAAAAAAAAAAAAAAA



Homology of Contig U35_45270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None