barSeed - Barley Seed Development Database

Probe ABC17590

Source Contig ABC17590

barSeed

Links

Affymetrix Source Sequence (768 bp)

>ABC17590 768
GGGCATACACGACAGTTCCATTGTGCTGCCCTGCACCATCTTTTTCAGAGTTCAATGGCG
ATCTTGTTTGTTTATGTGTGCTCATTTCTCCATACATTTCTTAAGTTGCTCCACCGAGTC
CTGGAGTACAAGGACGGAGCCACCTCGGTTGCTTCTGCATTTCCTGCTCATCCGGAAGCC
GCACAAGATAAGGAGCACAAGTTCTTATCGATAGCGGTGGAAGAAGCCTACCGAGCAGTC
GACTGTGGCCATGGACGCCCGTTTGGTGCAGTCGTGGTCCGCAACGACCAAGTAGTGGCC
AGCTGCCATAACATGGTTTTGAAGAACACTGATCCAACTGCACATGCTGAAGTAACTGCA
ATACGAGAGGCTTGCAGGAAGCTTGGGAAGATCGACTTGTCAGATTGTGAAATGTATGCA
TCCTGCGAACCTTGTCCGATGTGTTTTGGCGCTGTTCGTCTATCCCGGATCAAGAGGCTG
GTGTATGGAGCCAAGGCAGAAGCTGCTGTTGGAATTGGATTTGATGCCTTCATTGCTGAT
GCTCTCAGAGGAACTGGGCACTACCATACGCCCAACCTGGAGATAAAGCGAGCAGATGGG
ATTGGAGCCCTGCTTGCTGAACAGGTCTTTGAGAACACCAAGGGGAAATTCCGATTGAAA
TGATGTGTACATACAGACGTGACGTGATTTGACATCACGGAAGCCCCTGATGCTCAGAAA
AAATAATGTATTTGGCAAAATTATGCCANANAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11417.1	933	0.0	45 - 676	98	622 / 632	CUST_36863_PI390587928 CUST_29762_PI390587928	ABC17590
MLOC_11417.2	818	0.0	40 - 663	97	614 / 632	CUST_36863_PI390587928 CUST_29762_PI390587928	ABC17590
AK367079	859	7e-164	222 - 819	84	507 / 602	CUST_29361_PI390587928 CUST_29360_PI390587928	ABC04793 ABC17590
MLOC_13212.3	1498	7e-164	746 - 1343	84	507 / 602	CUST_29361_PI390587928	ABC04793 ABC17590
MLOC_13212.2	697	7e-164	64 - 661	84	507 / 602	CUST_29361_PI390587928	ABC04793 ABC17590
MLOC_11417.4	958	1e-117	1 - 245	98	240 / 245	CUST_29762_PI390587928	ABC17590
MLOC_11417.3	484	1e-131	13 - 288	97	269 / 276	CUST_36863_PI390587928 CUST_29762_PI390587928	ABC17590
MLOC_72410.1	696	8e-119	189 - 519	90	298 / 331	None	ABC17590 ABC25055
MLOC_72410.6	184	1e-56	12 - 182	90	154 / 171	None	ABC17590
MLOC_72410.5	554	5e-56	386 - 552	90	151 / 167	None	ABC17590
MLOC_72410.2	338	5e-56	170 - 336	90	151 / 167	None	ABC17590