- Probe CUST_29762_PI390587928
- Source Contig U35_47864
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29762_PI390587928 | Hv_44K_v2 | ATTGTGAAATGTATGCATCCTGCGAACCTTGTCCGATGTGTTTTGGCGCTGTTCGTCTAT | 498 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.057 | 0.116 | 0.546 | 2.281 | 1.747 | 2.663 |
| Raw | 13.219 | 41.199 | 169.898 | 1142.032 | 297.978 | 488.433 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11417.3 | 484 | 7e-23 | 373 - 432 | 98 | 59 / 60 | minus | ABC17590 |
| MLOC | MLOC_11417.4 | 958 | 7e-23 | 330 - 389 | 98 | 59 / 60 | minus | ABC17590 |
| MLOC | MLOC_11417.2 | 818 | 7e-23 | 325 - 384 | 98 | 59 / 60 | minus | ABC17590 |
| MLOC | MLOC_11417.1 | 933 | 7e-23 | 330 - 389 | 98 | 59 / 60 | minus | ABC17590 |
| JLOC1 | JLOC1_7560.1 | 954 | 4e-23 | 496 - 555 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC49371 | 572 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17590 | 768 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus | ABC17590 |
| Harvest35 | U35_47864 | 572 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8498 | 768 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus |
Contig Sequence (572 bp)
>U35_47864 572 Hv_44K_v2 GCCATCCCTCGCCATGGACGAAGCCAAAGGTGCTCCAAAACCGTACCAATGATTGACGCC GATCGATAAGAAGCGGAAGAAGGCACGGCCCTGCGTTTGTTAAAACTGGGGATTCTGGTG GCTCGCAGAGCTGGCATACACGACAGTTCCATTGTGCTGCCCTGCACCATCTTTTTCAGA GTTCAATGGCGATCTTGTTTGTTTATGTGTGCTCATTTCTCCATACATTTCTTAAGTTGC TCCACCGAGTCCTGGAGTACAAGGACGGAGCCACCTCGGTTGCTTCTGCATTTCCTGCTC ATCCGGAAGCGGTGGAAGAAGCCTACCGAGCAGTCGACTGTGGCCATGGACGCCCGTTTG GTGCAGTCGTGGTCCGCAACGACCAAGTAGTGGCCAGCTGCCATAACATGGTTTTGAAGA ACACTGATCCAACTGCACATGCTGAAGTAACTGCAATACGAGAGGCTTGCAGGAAGCTTG GGAAGATCGACTTGTCAGATTGTGAAATGTATGCATCCTGCGAACCTTGTCCGATGTGTT TTGGCGCTGTTCGTCTATCCCGGATCAAGAGG
Homology of Contig U35_47864 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g14150.1 | 203 | 2e-57 | protein|cytidine deaminase, putative, expressed |
| Brachypodium v1_2 | Bradi1g02710.1 | 187 | 2e-57 | |
| Arabidopsis v10 | AT5G28050.2 | 204 | 8e-53 | Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045484 REVERSE LENGTH=204 |