Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_36863_PI390587928Hv_44K_v2GATTTGACATCACGGAAGCCCCTGATGCTCAGAAAAAATAATGTATTTGGCAAAATTATG685GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0920.1590.5492.3551.7532.640
Raw 54.556152.690454.7843131.427784.8171280.935



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_11417.34843e-2116 - 759758 / 60minus ABC17590
MLOCMLOC_11417.28183e-2143 - 1029758 / 60minus ABC17590
MLOCMLOC_11417.19333e-2148 - 1079758 / 60minus ABC17590
JLOC1JLOC1_7560.19542e-21778 - 8379758 / 60plus
Harvest21ABC175907683e-25686 - 74510060 / 60plusABC17590
Harvest35U35_84987683e-25686 - 74510060 / 60plus



Contig Sequence (768 bp)

>U35_8498 768 Hv_44K_v2
GGGCATACACGACAGTTCCATTGTGCTGCCCTGCACCATCTTTTTCAGAGTTCAATGGCG
ATCTTGTTTGTTTATGTGTGCTCATTTCTCCATACATTTCTTAAGTTGCTCCACCGAGTC
CTGGAGTACAAGGACGGAGCCACCTCGGTTGCTTCTGCATTTCCTGCTCATCCGGAAGCC
GCACAAGATAAGGAGCACAAGTTCTTATCGATAGCGGTGGAAGAAGCCTACCGAGCAGTC
GACTGTGGCCATGGACGCCCGTTTGGTGCAGTCGTGGTCCGCAACGACCAAGTAGTGGCC
AGCTGCCATAACATGGTTTTGAAGAACACTGATCCAACTGCACATGCTGAAGTAACTGCA
ATACGAGAGGCTTGCAGGAAGCTTGGGAAGATCGACTTGTCAGATTGTGAAATGTATGCA
TCCTGCGAACCTTGTCCGATGTGTTTTGGCGCTGTTCGTCTATCCCGGATCAAGAGGCTG
GTGTATGGAGCCAAGGCAGAAGCTGCTGTTGGAATTGGATTTGATGCCTTCATTGCTGAT
GCTCTCAGAGGAACTGGGCACTACCATACGCCCAACCTGGAGATAAAGCGAGCAGATGGG
ATTGGAGCCCTGCTTGCTGAACAGGTCTTTGAGAACACCAAGGGGAAATTCCGATTGAAA
TGATGTGTACATACAGACGTGACGTGATTTGACATCACGGAAGCCCCTGATGCTCAGAAA
AAATAATGTATTTGGCAAAATTATGCCANANAAAAAAAAAAAAAAAAA



Homology of Contig U35_8498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g61810.11878e-102protein|tRNA-specific adenosine deaminase, putative, expressed
Brachypodium v1_2Bradi1g02710.11872e-101
Arabidopsis v10AT5G28050.22042e-94Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045484 REVERSE LENGTH=204