barSeed - Barley Seed Development Database

Probe ABC16291

Source Contig ABC16291

barSeed

Links

Affymetrix Source Sequence (1085 bp)

>ABC16291 1085
GCTGCAGGACTGTCCCCCTCCCGCGAATCCTGTGTCGCCGTCTTGCGCAGCACACCTCCG
GATCCATCTCTCGTGCCCGCAACCCTCACCCGTGGTGGACCTTGTTGCCAGATCGCTGGA
TCTGATGAATCCGCTCCTCTCCGACAAGGCCACAGCTGGATCGGGTCCTCCGCAACAAGG
CCACCATTGGATCCCCTCCTCTCCTCCGCTCCGCCCTCTCCAGTAGCTCTCCATCGCCCT
CGCGCCCCAGATCCAAACCACCAGCAGTTCGAGGCGAAACCCTCGTGCTCATCACCTCCA
TCTCCACCACGGAGGGAAGGCGAAGCCGCTCAAGCAGGCCAAGGTCGCCGAGAAGGACTA
CAACGAGATGCACGCTGATGATTTCCGGCAAGACCTGTATGGTTTAGTCACAGCACTAAA
AAATGGTGGTTACTCAGATGATATGACCCTTGCTGCAATCGCTGGTAATATTTTGAGCAT
GGAATCACATCTTTTCTGATGCGTAGCTATAAAGTCTGCATTAGTAATGGAAACTAATTT
TGATAATGTATGCAATGTTAACCTTACATTACATGCTCAAAGTCGCTATATAACAGCCAT
TTATCCTTTTTCTCTTTGAGATTTTGGCTTTTGCCTCTATTAAATTGCGGATGTATTATA
ATATAACATTTTTTGCAAGTAACTTGAATGCATCCTTTATATAGCGCAACATAAGCGGCT
GAAACTTCACCACCTGTTGTTGTGTTTCCACACCCTCTTGCAAGTGTATCTCAACTTCTA
GCTTGCATTAGAAACATATTCACCTCATCTACATTCAGTTTACATCGCATTTTATTGGCA
TGCCATGTTTTTCGTGCAGATACTGGAATTATCTAAGGAAACAAACTTTTGTTCTTGAAT
CGTATGTATCAAAGGTCAACTGGATAATGTATCGTGCACTGTTTGGTGTACATTTCTATT
TGTCATGTGGATTTGTTTGTCCCTATGTTATGGCTTTGGTATCTTGCACACTTTCCGTCT
TCTGTGTTACTGTTAGTTTCTAAATCTGGTCTCAGTCTCAGCCATGGTTTATAGTCCTGT
ATATA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_21344.3	1119	0.0	174 - 1096	99	922 / 923	CUST_27233_PI390587928	ABC16291 ABC30267
MLOC_21344.2	1092	0.0	226 - 945	99	719 / 720	CUST_27233_PI390587928	ABC16291
MLOC_21344.1	634	1e-158	308 - 611	100	304 / 304	CUST_18885_PI390587928 CUST_10953_PI390587928	ABC16291 ABC23156 ABC24312 ABC30267
MLOC_21344.5	1011	1e-103	785 - 989	100	205 / 205	None	ABC16291 ABC30267
MLOC_21344.6	912	1e-103	685 - 889	100	205 / 205	None	ABC16291 ABC30267
MLOC_11875.4	888	5e-92	669 - 888	95	208 / 220	CUST_18376_PI390587928 CUST_53_PI415269222	ABC16291
MLOC_42730.1	201	3e-89	1 - 179	100	179 / 179	None	ABC16291
MLOC_21344.4	1131	4e-73	960 - 1109	100	150 / 150	None	ABC16291 ABC30267
MLOC_11875.2	1753	1e-63	885 - 1029	97	141 / 145	CUST_53_PI415269222 CUST_18376_PI390587928 CUST_33773_PI390587928	ABC11619 ABC16291
MLOC_11875.1	2178	1e-63	1310 - 1454	97	141 / 145	CUST_18376_PI390587928 CUST_53_PI415269222 CUST_33773_PI390587928	ABC11619 ABC16291
MLOC_11875.3	1792	1e-63	850 - 994	97	141 / 145	CUST_33772_PI390587928 CUST_18376_PI390587928 CUST_53_PI415269222 CUST_33773_PI390587928	ABC11619 ABC16291