barSeed - Barley Seed Development Database

Probe CUST_33773_PI390587928

Source Contig U35_4622

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33773_PI390587928	Hv_44K_v2	GCAACTCATAGTAGTTCTTGTAACATTACAGATATGTAACTGGCAGATTGATTGAAGAAG	564	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.863	1.336	1.211	0.890	0.342	0.353
Raw	2660.477	2976.357	2362.333	2721.758	368.280	419.516

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11875.2	1753	2e-24	1672 - 1731	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.1	2178	2e-24	2097 - 2156	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.3	1792	2e-24	1733 - 1792	100	60 / 60	plus	ABC11619 ABC16291
JLOC1	JLOC1_7917.2	1646	8e-25	1545 - 1604	100	60 / 60	plus
Harvest21	ABC11619	656	3e-25	33 - 92	100	60 / 60	minus	ABC11619
Harvest35	U35_4622	656	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_4622 656 Hv_44K_v2
GTGAGCTTCTTGTTAATATGCACTCTCACTGAACTCGTTTCGATGTGGAATTTGACGAGA
GTTGAGATCCAACTCTGCAACATGTTATCTCCAGAAGGACCACAAGACTCCCTTCGTTCA
TATAACTGGGGGCTTGTGTTCGTTGCCGTGTTAGTAGACAATTTCCTCTACCCGATATCT
GCCATCCGGTCCCATTTCTCCCAATCAATCAATTGGTCTGGTATCAGGTACTACCTGAGA
GATGGGAAAATAAGCAAGATTGAAAGGGAGAACAGTTCGAAGTACACCGATCTCGGTGGG
AAGCATCTCTATGGCAAGAGGACATACCCTGCTGGAAAGTCGTTGCTCGGCTACCTGTCC
ATAAGCCTAGCCCAATGGCACCAGCCGAAGAAGTATGATGTCTGAGAATGCCTAGTGGAA
TCCTGTCCTCAATTTTGTGGGGCGTCGTGTTGTACACCTGTGTTTTGTTCTTCTTTTCTT
TTGGTTTATTGATTGTTTATTGGTTGGTAATGGTAGGGTCTCTCATTCTTACTGGATTCA
GTTGTTCAGGCGTTAATTAAAATTGCAACTCATAGTAGTTCTTGTAACATTACAGATATG
TAACTGGCAGATTGATTGAAGAAGTGAAAAATGTTCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_4622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67870.1	518	2e-76	protein\|expressed protein
Brachypodium v1_2	Bradi2g58060.1	518	2e-79
Arabidopsis v10	AT2G19880.2	520	1e-56	Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:8581578-8585118 FORWARD LENGTH=520