barSeed - Barley Seed Development Database

Probe ABC24312

Source Contig ABC24312

barSeed

Links

Affymetrix Source Sequence (656 bp)

>ABC24312 656
GACCGGTGAGATCTCGTTGCTATTTATTAGTGTATTTCACTAAATGTTGCACCATATGAG
TTCTGTCTATTTAGTTACAGTGATAGTAGCACTGTAGTTTTTCGAGGCAGTGATATATAA
TTTTCTTTAACTTACATTAAGAAATGGATTTGCTTCATTGTCCAACAAGTAATTGATATG
AATTGCATCTAACCTGAGTGAAAAATCTTATACAAGAAACATATTTTTGTTAAATTTATA
ATTATTTCAGTTCATGTTTTTCAAAACACAAGTCCATTATTTTCCCCTGTAGGCCCATGT
GCCACTGATATCAAATCAGACTCTTAGAAATAAGATTAACATTTCATTTCATACAGAAAT
TTCTTCATGCATGCGTTTGAACTTTTGGACATTCTTGCCAATCTAATATTTTAACCACCT
ACAGGTCAACTTGATCAATCTTGACACCAACATCAGGAATCATTCGAGCGGAAGTGTCAC
CAGCCCTTCGCCATTGCGAGAATATACATTGTGCACACTCCTTTACAGTAGCTCGAGGCG
TACTAAATAGAATGTAAAGATTGTAATATTGTAATGGTAGGCATATCTGGGTTGGATTAA
ACATGTACAACTTGTAGTAGGCTTTTTTACCATCTGTTCTGTTTAAAATATTGATT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_21344.1	634	1e-111	76 - 310	98	230 / 235	CUST_10953_PI390587928 CUST_18885_PI390587928	ABC16291 ABC23156 ABC24312 ABC30267
MLOC_80974.1	244	1e-105	1 - 244	95	232 / 244	None	ABC24312
MLOC_45945.1	648	2e-73	71 - 306	88	208 / 236	CUST_9864_PI390587928	ABC23156 ABC24312 ABC30267
MLOC_45945.2	552	2e-73	71 - 306	88	208 / 236	CUST_9864_PI390587928	ABC04655 ABC23156 ABC24312 ABC30267
MLOC_79039.3	1306	2e-60	1106 - 1266	93	150 / 161	None	ABC23156 ABC24312 ABC30267
MLOC_79039.1	962	2e-60	734 - 894	93	150 / 161	None	ABC23156 ABC24312 ABC30267