barSeed - Barley Seed Development Database

Probe CUST_33772_PI390587928

Source Contig U35_4623

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33772_PI390587928	Hv_44K_v2	CTCTGTCGTCATGATTTACTAAACCATGTTTTATTTGGACTTGAATTTCAGGTGTTCGTT	218	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.744	1.348	1.452	0.823	0.423	0.386
Raw	30.131	39.154	34.676	31.685	4.084	4.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11875.3	1792	2e-24	1253 - 1312	100	60 / 60	plus	ABC11619 ABC16291
Harvest21	ABC11620	710	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_4623	710	3e-25	219 - 278	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_4623 710 Hv_44K_v2
TTCTCATGTCGTGCCATGTTCTTTCAGGTCTGAAACTAGTGAGCTTCTTGTTAATATGCA
CTCTCACTGAACTCGTTTCGATGTGGAATTTGACGAGAGTTGAGATCCAACTCTGCAACA
TGTTATCTCCAGAAGGACCACAAGACTCCCTTCGTTCATATAACTGGGGGCTTGTGGGTG
CCTCTTCCAGAGCACCAACTTATTTCAGTTTCAGGCACCTCTGTCGTCATGATTTACTAA
ACCATGTTTTATTTGGACTTGAATTTCAGGTGTTCGTTGCCGTGTTAGTAGACAATTTCC
TCTACCCGATATCTGCCATCCGGTCCCATTTCTCCCAATCAATCAATTGGTCTGGTATCA
GGTACTACCTGAGAGATGGGAAAATAAGCAAGATTGAAAGGGAGAACAGTTCGAAGTACA
CCGATCTCGGTGGGAAGCATCTCTATGGCAAGAGGACATACCCTGCTGGAAAGTCGTTGC
TCGGCTACCTGTCCATAAGCCTAGCCCAATGGCACCAGCCGAAGAAGTATGATGTCTGAG
AATGCCTAGTGGAATCCTGTCCTCAATTTTGTGGGGCGTCGTGTTGTACACCTGTGTTTT
GTTCTTCTTTTCTTTTGGTTTATTGATTGTTTATTGGTTGGTAATGGTAGGGTCTCTCAT
TCTTACTGGATTCAGTTGTTCAGGCGTTAATTAAAATTGCAACTCATAGT

Homology of Contig U35_4623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67870.1	518	1e-72	protein\|expressed protein
Brachypodium v1_2	Bradi2g58060.1	518	1e-75
Arabidopsis v10	None