barSeed - Barley Seed Development Database

Probe ABC15796

Source Contig ABC15796

barSeed

Links

Affymetrix Source Sequence (1098 bp)

>ABC15796 1098
GCCTCGTGCCGCACGTACGGGNGTGGTGTACAAGGGCCCGGGACAGGGCCACCAACGAGA
CCATCGCACTCAAGAAGATCCGCCTCGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCA
TCCGCGAGATCTCGCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAAGCTGCACGATG
TTGTCCACAGCGAGAAGCGCATATGGCTCGTCTTCGAGTACCTGGATCTGGACCTGAAGA
AGTTCATGGACTCCTGCCCAGAGTTTGCCAAGAGTCCCGCCTTGATCAAGTCATACCTCT
ATCAGATACTCCGTGGCGTTGCTTATTGTCATTCTCATAGAGTTCTTCATCGAGATTTGA
AACCTCAGAATTTATTGATAGACCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTT
TAGCAAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGGTAGTGACATTATGGT
ACAGAGCTCCAGAAATCCTTCTTGGAGCGAGGCAGTATTCCACACCAGTTGACGTGTGGT
CAGTGGGCTGTATCTTTGCAGAAATGGTGAACCAGAAGCCCCTGTTCCCTGGCGATTCTG
AGATTGATGAATTATTTAAGATCTTCAGGGTGCTTGGCACTCCAAATGAACAAACCTGGC
CAGGTGTGAGCTCCTTGCCTGACTACAAGTCCGCTTTCCCCAGGTGGCAGGCAGAGGACC
TTGCAACAATTGTCCCCAATCTTGAACCTGTTGGCCTCGACCTTCTCTTTAAAATGCTTC
GGTTCGAGCCAAATAAGAGGATCCCGGCCAGGCAGGCTCTTGAGCACGAGTACTTCAAGG
ATATGGAGATGGTACAGTGAGCTGGCTGTGTGGTAGTGACTGGCATATGTATGAGCTGAG
CTGCTCGTTTCATTCCTTTTGCGAGACAAGCCTTCCCCTTTTCGGCATTTTTGTCTGTCA
ACTGAATATTTCAGATCTGGTGTGTTTGAGGTGTGCTCAGGATTTGCTGCTAAATAGATT
ACCATCTTGGTCTCTATTTGTTCAAAGTAAATATTGTCATGCGTTCATCTTTCAATGAGG
CAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_50290.1	1277	0.0	193 - 1262	99	1066 / 1072	CUST_36319_PI390587928 CUST_36320_PI390587928	ABC15052 ABC15796
MLOC_50290.3	1324	0.0	188 - 1165	99	974 / 980	CUST_36319_PI390587928	ABC15052 ABC15796
MLOC_50290.2	1123	0.0	193 - 1068	99	872 / 878	CUST_36319_PI390587928	ABC15052 ABC15796
MLOC_60707.1	1432	1e-158	134 - 963	79	661 / 837	CUST_18570_PI390587928	ABC15052 ABC15796
MLOC_76169.1	318	9e-65	13 - 254	85	209 / 245	None	ABC15052 ABC15796
AK357364	2576	2e-61	387 - 622	85	208 / 245	CUST_21187_PI390587928	ABC15052 ABC15796 ABC34750 ABC43884