barSeed - Barley Seed Development Database

Probe CUST_18570_PI390587928

Source Contig U35_6868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18570_PI390587928	Hv_44K_v2	ACCAACTGATGTGGCAATGTTTGGTAGTGTACTACTACTTTTACTTGGTAAACATCATTA	1161	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.405	1.423	1.190	0.952	0.430	0.374
Raw	1096.590	1741.805	1288.115	1582.465	256.157	242.343

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60707.1	1432	7e-23	1299 - 1358	98	59 / 60	plus	ABC15052 ABC15796
JLOC1	JLOC1_39615.1	1450	4e-23	1288 - 1347	98	59 / 60	plus
Harvest21	ABC15052	1246	3e-25	1162 - 1221	100	60 / 60	plus	ABC15052
Harvest35	U35_6868	1246	3e-25	1162 - 1221	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_6868 1246 Hv_44K_v2
GCGGGGTGGTGTACAAGGCCAAGGACCGCTACACCAACGAGACGATCGCGCTCAAGAAGA
TCCGGCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCCCTCC
TCAAGGAGATGCAGCACCGTAACATCGTCAGGCTGCAGGACGTGGTGCACAACGAGAAGT
GCATATACCTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCC
CGGACTTCAAGAACCACCACATAGTCAAGTCCTTCCTCTACCAGATCCTGCGTGGCATCG
CCTACTGCCACTCGCACCGCGTGCTTCACAGGGATCTCAAGCCCCAGAACCTGCTCATAG
ATCGCCGCACCAATTCGTTGAAGCTTGCTGACTTCGGATTGGCCAGGGCGTTCGGCATTC
CTGTCAGGACATTCACTCATGAGGTGGTAACATTATGGTACAGAGCGCCAGAAATTCTTC
TGGGTGCAAGGCAATATTCTACCCCTGTTGATGTGTGGTCGGTTGGTTGCATTTTTGCTG
AAATGGTGAATCAGAAACCTTTATTTCCTGGTGATTCTGAGATTGATGAACTCTTCAAGA
TTTTCAGAATTATGGGCACTCCTAATGAAGAAACCTGGCCAGGTGTTTCTTCGTTACCTG
ACTACAAATCAGCTTTCCCCAAGTGGCCGTCCGTGGATCTTGCAACTGTGGTTCCAACAC
TCGAACCTTTGGGACTTGATCTTCTCTCTAAAATGCTCTGCTTAGATCCAAGCAGAAGAA
TCAACGCCCGAACCGCCCTCGAGCACGAGTACTTCAAGGATCTGGACGTGTCCTTGTAGA
TCGCGTCCCCTGCTCCACTGTAAATTAAGATCGCGTCGGTTGCTCGAGAGCTTCCTGAAT
CCTCCCGGACTGTGTGCTTCATTCTCTCCTATTCTTTCTGACTCTGGCTGTGTGTAGAGA
GAAATGAGAACGGACGGTGCCGCCTGGTTCACCCTTCTGTGTAGCCCAGGCCAATTGAGA
AACATCCTGGTGTTTCGGGAGCTCCGCATTGCGATTTCGCCCGTATTCATATGGACACCG
ACGCCGGCACCAGACTTGTGCATGTACGATAAATTTTGTAGTAGTAGCAGATTGTCAAGG
GGCTGCAGTGTTTCGTGAACTACCAACTGATGTGGCAATGTTTGGTAGTGTACTACTACT
TTTACTTGGTAAACATCATTATCATCNTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03060.1	377	0.0	protein\|cyclin-dependent kinase A-2, putative, expressed
Brachypodium v1_2	Bradi3g02270.1	294	0.0
Arabidopsis v10	AT3G48750.1	294	2e-170	\| Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 \| cell division control 2 \| chr3:18072238-18074296 FORWARD LENGTH=294