barSeed - Barley Seed Development Database

Probe ABC15052

Source Contig ABC15052

barSeed

Links

Affymetrix Source Sequence (1246 bp)

>ABC15052 1246
GCGGGGTGGTGTACAAGGCCAAGGACCGCTACACCAACGAGACGATCGCGCTCAAGAAGA
TCCGGCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCCCTCC
TCAAGGAGATGCAGCACCGTAACATCGTCAGGCTGCAGGACGTGGTGCACAACGAGAAGT
GCATATACCTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCC
CGGACTTCAAGAACCACCACATAGTCAAGTCCTTCCTCTACCAGATCCTGCGTGGCATCG
CCTACTGCCACTCGCACCGCGTGCTTCACAGGGATCTCAAGCCCCAGAACCTGCTCATAG
ATCGCCGCACCAATTCGTTGAAGCTTGCTGACTTCGGATTGGCCAGGGCGTTCGGCATTC
CTGTCAGGACATTCACTCATGAGGTGGTAACATTATGGTACAGAGCGCCAGAAATTCTTC
TGGGTGCAAGGCAATATTCTACCCCTGTTGATGTGTGGTCGGTTGGTTGCATTTTTGCTG
AAATGGTGAATCAGAAACCTTTATTTCCTGGTGATTCTGAGATTGATGAACTCTTCAAGA
TTTTCAGAATTATGGGCACTCCTAATGAAGAAACCTGGCCAGGTGTTTCTTCGTTACCTG
ACTACAAATCAGCTTTCCCCAAGTGGCCGTCCGTGGATCTTGCAACTGTGGTTCCAACAC
TCGAACCTTTGGGACTTGATCTTCTCTCTAAAATGCTCTGCTTAGATCCAAGCAGAAGAA
TCAACGCCCGAACCGCCCTCGAGCACGAGTACTTCAAGGATCTGGACGTGTCCTTGTAGA
TCGCGTCCCCTGCTCCACTGTAAATTAAGATCGCGTCGGTTGCTCGAGAGCTTCCTGAAT
CCTCCCGGACTGTGTGCTTCATTCTCTCCTATTCTTTCTGACTCTGGCTGTGTGTAGAGA
GAAATGAGAACGGACGGTGCCGCCTGGTTCACCCTTCTGTGTAGCCCAGGCCAATTGAGA
AACATCCTGGTGTTTCGGGAGCTCCGCATTGCGATTTCGCCCGTATTCATATGGACACCG
ACGCCGGCACCAGACTTGTGCATGTACGATAAATTTTGTAGTAGTAGCAGATTGTCAAGG
GGCTGCAGTGTTTCGTGAACTACCAACTGATGTGGCAATGTTTGGTAGTGTACTACTACT
TTTACTTGGTAAACATCATTATCATCNTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60707.1	1432	0.0	139 - 1368	99	1223 / 1230	CUST_18570_PI390587928	ABC15052 ABC15796
MLOC_50290.3	1324	5e-167	195 - 1022	80	661 / 830	CUST_36319_PI390587928	ABC15052 ABC15796
MLOC_50290.2	1123	5e-167	200 - 1027	80	661 / 830	CUST_36319_PI390587928	ABC15052 ABC15796
MLOC_50290.1	1277	5e-167	200 - 1027	80	661 / 830	CUST_36320_PI390587928 CUST_36319_PI390587928	ABC15052 ABC15796
MLOC_76169.1	318	2e-112	4 - 251	96	240 / 249	None	ABC15052 ABC15796
AK357364	2576	1e-109	390 - 650	94	252 / 268	CUST_21187_PI390587928	ABC15052 ABC15796 ABC34750 ABC43884