barSeed - Barley Seed Development Database

Probe CUST_36320_PI390587928

Source Contig U35_6450

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36320_PI390587928	Hv_44K_v2	CATCTTGGTCTCTATTTGTTCAAAGTAAATATTGTCATGCGTTCATCTTTCAATGAGGCA	577	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.414	1.552	1.252	1.004	0.335	0.323
Raw	1136.076	1933.524	1357.850	1711.483	200.981	212.552

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50290.1	1277	2e-24	1203 - 1262	100	60 / 60	plus	ABC15052 ABC15796
Harvest21	ABC15796	1098	3e-25	1023 - 1082	100	60 / 60	plus	ABC15796
Harvest35	U35_6450	653	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_6450 653 Hv_44K_v2
TCGTACATTTACTCATGAGGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGG
AGCGAGGCAGTATTCCACACCAGTTGACGTGTGGTCAGTGGGCTGTATCTTTGCAGAAAT
GGTGAACCAGAAGCCACTGTTCCCTGGCGATTCTGAGATTGATGAATTATTTAAGATCTT
CAGGGTGCTTGGCACTCCAAATGAACAAACCTGGCCAGGTGTGAGCTCCTTGCCTGACTA
CAAGTCCGCTTTCCCCAGGTGGCAGGCAGAGGACCTTGCAACAATTGTCCCCAATCTTGA
ACCTGTTGGCCTCGACCTTCTCTCTAAAATGCTTCGGTTCGAGCCAAATAAGAGGATCAC
GGCCAGGCAGGCTCTTGAGCACGAGTACTTCAAGGATATGGAGATGGTACAGTGAGCTGG
CTGTGTGGTAGTGACTGGCATATGTATGAGCTGAGCTGCTCGTTTCATTCCTTTTGCGAG
ACAAGCCTTCCCCTTTTCGGCATTTTTGTCTGTCAACTGAATATTTCAGATCTGGTGTGT
TTGAGGTGTGCTCAGGATTTGCTGCTAAATAGATTACCATCTTGGTCTCTATTTGTTCAA
AGTAAATATTGTCATGCGTTCATCTTTCAATGAGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02680.2	295	4e-90	protein\|cyclin-dependent kinase A-1, putative, expressed
Brachypodium v1_2	Bradi1g77325.1	294	2e-94
Arabidopsis v10	AT3G48750.1	294	9e-74	\| Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 \| cell division control 2 \| chr3:18072238-18074296 FORWARD LENGTH=294