barSeed - Barley Seed Development Database

Probe ABC12286

Source Contig ABC12286

barSeed

Links

Affymetrix Source Sequence (1793 bp)

>ABC12286 1793
CTGCAACCAGCTAGCTAGCAAAGATGGCCATGGCCAGGAGCTCCAGCCTAGTGCTCGTCG
CCTTCGCCCTGCTCTGCTGCTACGCCTCCTCCGTCGCCTCCCAGGGTAACTCGTCCGATG
CATTCCTCTCGTGCCTGTCGGCGAGCATCCCCGGCCAGCTCGTGTTCACGCCGAGCTCGC
CGTCGTTCACGCCTCTGCTCAAGTCCTCCATCCGGAACCCCAAGTTCTTCACCCCGAGCA
CCGTGAGGCCGCTCTACATCGTCACGCCCACGAACGCGTCGCACGTGCAGGCCGCCGTGC
TCTGCGGACGCCGGAGCGGGCTGCGCATCCGCGTGCGCAGCGGCGGGCACGACTACGAGG
GCCTGTCGTACCGGTCCGTGCGGGCCGAGGCGTTCGCGGTGCTCGACCTGTCGAGCCTCC
GCTCCGTGCGGGTCGACGCGCAGGCGGCGACCGCGTGGGTGGACTCCGGCGCCCAGCTCG
GCGAGCTCTATTATGCGATCGGGAAGGCCAGCAGCGTGCTCGGGTTCCCCGGCGGCCTGT
GCCCGACCGTCGGCGTCGGAGGCCATTTCAGCGGCGGCGGCTTCGGCATGCTGCTGCGAA
AGTACGGCATGGCCATCGACCACGTCATCGACGCCGTGCTGGTGGACGCCAAGGGGAGGC
TCCTGAACAAGAACACCATGGGGAGCGACGTCTTCTGGGCCCTCCGAGGCGGCGGCGGCG
AGAGCTTCGGGGTCGTGCTGTCGTGGCAGGTGAAGCTCCTGCCCGTCCCGCCCAAGGTCA
CGGTGTTCAACGTCCCGGTGACCGCAAGCCAGGGCGCCGCGGACGTGGTCACGAGGTGGC
AGCAGATCGCGCCGGCCCTGCCGGAGGACCTGATCATCAGGGTGGTCGTCCAGCAGAAGA
CGGCCAACTTCCAGTCCCTGTTCCTCGGCACCTGCGACGCGCTGCTGCCGGTGATGAGCA
GCCGCTTCCCGGAGCTGAGGTTCAACCGGTCCGACTGCAGGGAGATGACCTGGATCCAGT
CCGTGCCCTACATCTACCTCGGCAGCGCCTCGACCGTGGAGGACCTCCTGAACCGGACCA
CCGCCGAGTCCGTCTTCAGCAGCGGCTACAAGGCGACGTCCGACTACGTCCGGCGGGCCA
TCCCGCGGGACGCGTGGGCCAGCATCTTCACCAAGCTGGCGCAGCCCAACGCGGGGCTCA
TGATCCTGGACCCCTACGGCGGGCAGATCGCGGCCGTGCCGGAGTCGGCGACGCCGTACC
CGCACCGCGCCGGCGTGCTGTACAACATCCAGTACATGAACTTCTGGTCGATGGCGTCGG
GGGACGGGGCCGTGCAGACCAGGTGGATCAGGGAGTTCTACGCGTTCATGGCGCCGTTCG
TGAGCTCCAGCCCGAGGGAAGCCTACTTCAACTACAGGGACCTGGACCTCGGCGAGAACG
TCGTCGTCGGTAACGTCAGCAGCTTCCAGGCCGGGATGGTCTGGGGCCAGAAGTACTTCA
AGGGTAACTACCAGAGGCTGGCGATGGCCAAGGCCCAGATCGACCCCGACGACTACTTCA
GGAACGAGCAGAGCATCCCGCCATTTGCCAATAGCAGGTGATCGAACAGCAAAATGGGCC
GCTAGCTCTTTTGTGTACATGGTAGCTAAGTAGCTAGCTACATATTTAACTTTATTTGTA
CATGTATTTGTTGATGCTGGTTTGTGATTGCTTACCACAATGATTGTGGTATATGTGTAC
ATGTATTTGTATCTTGAACAAATCTATAATTAAATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_67318.1	1837	0.0	22 - 1795	99	1768 / 1774	CUST_41502_PI390587928	ABC12286
AK363875	1796	0.0	20 - 1786	99	1760 / 1774	CUST_41502_PI390587928	ABC12286
MLOC_56681.1	1815	0.0	350 - 1608	81	1030 / 1265	None	ABC12286
AK356380	2072	0.0	148 - 1610	79	1179 / 1484	CUST_19538_PI390587928 CUST_3244_PI390587928 CUST_288_PI390587928	ABC12286
MLOC_56680.1	3138	0.0	1658 - 2951	79	1041 / 1312	CUST_26974_PI390587928	ABC12286
MLOC_56680.2	1649	0.0	169 - 1462	79	1041 / 1312	CUST_26974_PI390587928	ABC12286
MLOC_33192.1	1401	0.0	1 - 1236	80	1004 / 1257	CUST_288_PI390587928	ABC12286
MLOC_1973.1	974	0.0	1 - 849	82	694 / 851	None	ABC12286 ABC14427
MLOC_63550.3	1874	0.0	243 - 1688	76	1117 / 1479	CUST_32469_PI390587928 CUST_32470_PI390587928	ABC12286 ABC14427
MLOC_63550.1	1896	0.0	327 - 1772	76	1117 / 1479	CUST_32470_PI390587928	ABC12286 ABC14427
MLOC_63550.2	2418	0.0	849 - 2294	76	1117 / 1479	CUST_32469_PI390587928 CUST_32470_PI390587928	ABC12286 ABC14427
AK369108	1708	5e-144	217 - 1593	74	1053 / 1421	CUST_2317_PI390587928	ABC12286 ABC42051
MLOC_68912.1	2192	2e-138	500 - 1887	74	1055 / 1428	CUST_1245_PI390587928 CUST_39446_PI390587928	ABC12286
AK360832	2554	4e-130	151 - 823	80	538 / 676	None	ABC12286 ABC49853
MLOC_3968.1	1660	4e-130	750 - 1422	80	538 / 676	None	ABC12286 ABC49853
MLOC_3968.2	1418	4e-130	508 - 1180	80	538 / 676	None	ABC12286 ABC49853
MLOC_35253.1	1082	1e-119	10 - 597	80	483 / 603	CUST_18896_PI390587928	ABC12286
MLOC_41766.1	761	7e-103	219 - 761	80	440 / 553	CUST_2317_PI390587928	ABC12286
MLOC_62372.1	1868	1e-79	184 - 810	76	480 / 635	None	ABC12286