barSeed - Barley Seed Development Database

Probe CUST_18896_PI390587928

Source Contig U35_30361

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18896_PI390587928	Hv_44K_v2	AACATTCAGTACATGAATTTCTGGTCGGCTGCCACGGACGGATCGGCGCAGACGAAGTGG	482	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.858	0.977	0.677	0.553	1.265	1.126
Raw	15.601	6.864	2.616	3.461	3.330	3.310

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35253.1	1082	7e-23	301 - 360	98	59 / 60	plus	ABC12286
Harvest21	ABC30257	619	3e-25	483 - 542	100	60 / 60	plus
Harvest35	U35_30361	619	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_30361 619 Hv_44K_v2
GAGCTCAGTCCGTCGACCAGGGCGCCGTGGACGTCCTCACCAGATGGCAACAAGTCGCCC
CAGCTCTCCCTGAAGACCTTTTCATCAGGGTGCTCGCGCAGAAACAGGAGGCCAACTTCC
AGTCCATGTACCTGGGGACGTCGGACACGCTGCTGCCGCTGATGCGCAGCCGCTTCCCGG
AGCTCGGCCTGAACCGGACGCACTGCAAGGAGATGACATGGATCCAGTCCGTGCCGTACA
TCTACCTGGGCAGCGCGGCCAGCGTCGAGGACATCCTGAACCGGACCACGGCCACGAAGT
CCTTCAGCAAGGCCACGTCCGACTACGTCCGTCAGGCCATCCCCAGGGAGGCGTGGGTGA
AGATCTTCGCCTGGCTCGCCAAGCCGGACTCCGGGCTCATGATCATGGACCCTTACGGCG
GGAAGATCGGTAGCGTCCCGGAGTCGGCGACGCCGTTCCCGCACCGTGGCGGGGTGCTGT
ACAACATTCAGTACATGAATTTCTGGTCGGCTGCCACGGACGGATCGGCGCAGACGAAGT
GGCTCANGGATTTCTTCGCCTTCATGGGGCCGTACGTGAGCAACAACCCCAGGGAGGCGT
ACGTGAACTACAGGGACCT

Homology of Contig U35_30361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35700.1	529	2e-100	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38250.1	522	1e-107
Arabidopsis v10	None