barSeed - Barley Seed Development Database

Probe CUST_32469_PI390587928

Source Contig U35_4869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32469_PI390587928	Hv_44K_v2	CGCGTGAAAATTTATGACAATATATTCGCATGAGATTTGAGATCTGATGGTATGAACATG	1170	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	15.534	5.998	1.788	0.318	0.135	0.127
Raw	805.625	503.127	124.065	34.655	2.908	3.829

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63550.3	1874	2e-24	73 - 132	100	60 / 60	minus	ABC12286 ABC14427
MLOC	MLOC_63550.2	2418	2e-24	679 - 738	100	60 / 60	minus	ABC12286 ABC14427
JLOC1	JLOC1_41639.1	1904	8e-25	104 - 163	100	60 / 60	minus
Harvest21	ABC14427	1259	1e-23	30 - 89	98	59 / 60	minus	ABC14427
Harvest35	U35_4869	1282	3e-25	1171 - 1230	100	60 / 60	plus

Contig Sequence (1282 bp)

>U35_4869 1282 Hv_44K_v2
CGGCGCCCGGGCTCGCGTTCTCTGCCGGCGTGTGCTCGACCTGGGCTTGGGCGGCCACAT
CAGCGGCGGCGGCATGGGCATGATGATGCGCAAGTACGGCCTCTCCATTGACAACGTCCT
CGACGCCACGCTGGTCGACGCCAACGGGAGGCTGCTGGACAAGGAGGCCATGGGGAGCGA
CCTCTTCTGGGCCATCCGCGGCGGCGGCGGCGGGAACTTCGGCATCGTGCTGTCGTGGAA
GGTCAGGCTGGTACCCGTCCCGCCGACAGTGACGTTCTCCAACATCCAGAAGACCATTGA
CCAGGGCGCGGCCAATGCCGTGACCAAATGGCAGGCGCTCGCGCCGGCCCTCCCCGAGGA
CCTCAGCATACGGGTGATCGTGCAGAACCAGCACGCCCTCTTCCAGACCCTGTATCTCGG
CGGCTGCAGCGCGCTGGTGCGCGCCATGAGCAGCCTGTTCCCCGAGCTCGGCATGACGCG
CGCCGACTGCCGGGAGATGACCTGGCTGCAGTCCACGGTCTACATCAACTCCGGCGACAC
CGAGACGCCGGTGGAGACGCTCCTCAACCGGACGACCAGCCTGAGCACCTTCACCAAGAA
CAAGTCTGACTACGTCAAGCAAGCCATCACCAAGGACACGTGGGAGAAGATCTTCCCCTG
GTTCAACAGCTCCGCCGCGGGGATCATGATCCTGGAGCCTCACGGCGGAAGGGTCGGCAG
CATCGCCGACGGCGACACGCCGTACCCTCACCGGAGCGGCGTCCTCTACAACATCCAGTA
CGTGGCGTTCTGGACGGGCAACGGCACGGACGGGCCGAACTGGATCAGTGGCCTGTACAA
CTTCATGGAGCCGTTCGTTAGCAAGAACCCGAGGGGTGCGTACGTGAACTACCGGGACCT
GGACATCGGGGAGAACACGGTGGTCGGCGGTGTCACCAGCTACGAAACCGGCAAGGTGTG
GGGTGAGAGTTACTTCGGGGCCAACTTCCAGAGGCTCGCCGTCACCAAGGGGAAGGTGGA
CGCCAGCGACTACTTCAGAAACGAGCAGAGCGTACCGCCACTTCTCTCGAGGAAGTGAAG
GTGAAACCTGGCCTGTCTATAATCTGAGGACATAAAACTGTAGCAGTGGATATGGCTTAG
AATGGAAGAACCTTTCATGATAGCTACTCACGCGTGAAAATTTATGACAATATATTCGCA
TGAGATTTGAGATCTGATGGTATGAACATGAATATTTAAACAGATAATACATTATACACC
TTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35650.1	527	4e-169	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi5g17300.1	518	0.0
Arabidopsis v10	AT4G20860.1	530	7e-92	FAD-binding Berberine family protein \| chr4:11172726-11174318 FORWARD LENGTH=530