barSeed - Barley Seed Development Database

Probe ABC12036

Source Contig ABC12036

barSeed

Links

Affymetrix Source Sequence (1696 bp)

>ABC12036 1696
CCGCACCCCGACGAGCGCGTGGAGTACGAGTTCTGGACCAACAGCAACGACGAGTGCGGC
GCCAAGTGCGACATGCAGATGAACTTCGTCCGCGACTTCCGCGGCGTGGCGCAGGTGCTG
GAGCAGCGCGGCTACACCCAGTTCGCGCCGCACTACATCACCTGGTACTGCCCGGAGGCC
TTCGTGCTGAGCGCGCAGTGCCGGTCGCAGTGCATCAACCACGGCCGCTACTGCGCCCCC
GACCCGGAGCAGGACTTCACCACCGGGTACGACGGCAAGGACGTCGTCGTCCAGAACTTG
ATCCAGATCTGCCTCTTCAAGGTGGCCAACGAGAGCCGCAAGCCGTGGCTGTGGTGGGAC
TACGTGCATGATTTTGCCATCAGGTGCCCGATGAAGGAGAAGAAGTACACCACCGAGTGC
GCTCGTGGTGTGATCAAGTCGCTTGGGATGGACACTGACAAGATTACCAAGTGCGTCGGA
GACCCCGACGCCGATGAGGACAATCCGGTGCTCAAGGCAGAGCAAGATGCTCAAATTGGT
CATGGTGCTCGAGGGGATGTTACCATACTGCCGACTTTCGTCGTCAATAACAGACAGTAC
AGAGGGAAACTGGATAAAAGGGCGGTGCTACGAGCGATATGTTCGGGATTTGAGGAGACA
ACTGAACCTGATATCTGTTTGACTCAAGACATACAAACAAACCAGTGCTTGGAAAACAAT
GGAGGTTGCTGGCTGGACAAGAACACTAATTTCACTGCGTGCAAGGATACCTTCCGTGGT
CGAGTTTGTGAGTGCCCGGTTGTGAATGGTGTAAAGTTTGTCGGCGACGGGTACACCCAC
TGTGAATCTTCCGGTGTCGGTCGATGCCAAATCAACAATGGGGGCTGCTGGAAGGAGACC
AGGAACGGCAAGTCTGTCTCGGCATGCTCGAATGAGCAAACCAAAGGCTGCAAATGTCCA
CAAGGCTTCAAGGGTGACGGCGTACACGGTTGCGAAGATGTTGATGAATGCAAAGAGAGG
CTCTTCTGCCAGTGCAAGGACTGCAGCTGTGAGAACACATGGGGAAGCTACGAGTGCGGC
TGCGGTGGTAGCAACATGCTGTACATGAGAGAGCACGACACTTGCATCAGCAAAGTGGCG
ACTTCGTCGGTGGGCTGGGGGTTCCTGTGGGTCATCTTCTTCGGCCTCGGCTTCGCGGGA
GTCGGAGCATACGCCGTCTACAAATATCGGCTACGGAGCTACATGGATTCAGAGATCCGC
GCGATCATGGCGCAGTACATGCCGCTGGAGAACCAGGAGACGTCGAGCCACCAACGGCAT
GTGGAGCACGCCGACATCTGAGACGGCCGAGGGTTTTTGCATACGGATCGAGCAGCGTCA
TAAGAGCCAAAGTCTTTCTCGTCGCAGTCCGTGGTTGGTGGCATCTCGTCGGGTTTGGAG
CTGCAGTTTTGAATTTCCAGAGGGTTGGTTCGTGGTTAGCGTATATGATCCCGAAAGACG
AAATGCTCTTCTCTTTNTTTCTCTTTCTGAAGACGAAACTTTGAGGACAGGTTTAGGATC
GATCTCGCCGGAATTTAGCCGTCATTTAGTCATAATTTCGATGCTCGTGGTCTTGNNCAG
CGTGATGACATTGTGTAAATACTGCTGTTCGTTCGGACTGAATCGTGTTNGCTGCCCTTT
NATAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374393	2787	0.0	1076 - 2760	99	1670 / 1686	CUST_10774_PI390587928	ABC10883 ABC12036
MLOC_44267.1	1547	0.0	524 - 1520	99	990 / 997	None	ABC12036
MLOC_34286.1	773	0.0	1 - 752	99	747 / 753	CUST_10774_PI390587928	ABC10883 ABC12036
MLOC_12555.1	2558	8e-147	460 - 1745	74	971 / 1307	CUST_2490_PI390587928 CUST_30966_PI390587928	ABC10883 ABC12036 ABC36804
MLOC_53134.5	1409	1e-65	477 - 898	78	333 / 428	None	ABC12036
MLOC_53134.3	2703	1e-65	878 - 1299	78	333 / 428	CUST_26290_PI390587928	ABC12036 ABC16182 ABC16183
MLOC_53134.1	4308	1e-65	893 - 1314	78	333 / 428	CUST_4618_PI390587928 CUST_26290_PI390587928	ABC12036 ABC14582 ABC16182 ABC16183
MLOC_12555.3	2443	7e-58	206 - 558	79	283 / 360	CUST_2490_PI390587928	ABC10883 ABC12036 ABC36804
MLOC_12555.2	2671	7e-58	306 - 658	79	283 / 360	CUST_2490_PI390587928	ABC10883 ABC12036 ABC36804
MLOC_53134.2	7026	3e-51	2436 - 2660	83	191 / 229	CUST_4618_PI390587928 CUST_26290_PI390587928	ABC12036 ABC14582 ABC16182 ABC16183