barSeed - Barley Seed Development Database

Probe CUST_4618_PI390587928

Source Contig U35_21616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4618_PI390587928	Hv_44K_v2	TGTATTCTAGAAATGTCGATCGCCATTTGTTTATGACAATCGAAACTCCCTTACCTCTTT	746	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	1.617	1.210	0.836	0.319	0.297
Raw	1436.843	2193.741	1406.067	1537.919	205.110	207.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53134.2	7026	3e-21	5257 - 5316	97	59 / 61	minus	ABC12036 ABC14582 ABC16182 ABC16183
MLOC	MLOC_53134.1	4308	3e-21	3005 - 3064	97	59 / 61	minus	ABC12036 ABC14582 ABC16182 ABC16183
JLOC1	JLOC1_34106.2	2397	2e-21	1560 - 1619	97	59 / 61	plus
JLOC1	JLOC1_34105.1	3328	2e-21	3008 - 3067	97	59 / 61	minus
Harvest21	ABC14582	806	3e-25	747 - 806	100	60 / 60	plus	ABC14582
Harvest35	U35_21616	806	3e-25	747 - 806	100	60 / 60	plus

Contig Sequence (806 bp)

>U35_21616 806 Hv_44K_v2
GGGCTGCAGGAGAAACTCGAGAAGCGGCTTGGGCCTGAGAAGATGAAGATTTGGGACGAG
GCGTTCGATGAGGCAGCAGATGAGGCACTGCCACACCCGATGAATGATGCGCTTCTCGAC
GCCATTCATACCAATAACATGATTGAGTTTGAGCCAGAGTACAATGTGAGCTTTGGTAAT
CCTGATATTGAGGAGAAGCCGCCAATGTCATTGGAGGAGATGCTGCAGAAAGTAAAGCCA
TTCATAGTTGCTTATGAAGGCATCCAGAACCAGGAAGAATGGGAGGAAGCCGTGAAAGAT
GTCATGGAAAGGGCACCCCATATGAAAGAGCTGATAGATATGTACAGTGGGCCTGATGTC
GTAACTGCAATACAACAAGAAGGGGAGCTGCAAAGAGTTGCCAACACTCTTCCAGAAAAC
ATACCCAATTCAGTAAAGCGGTTTACTGATAAAACTTTACTCTCTCTCAAGAATAATCCT
GGCTGGGGTTTTGACAGGAAGTGTCAATTCATGGACAAGTTTGTCCGTGAAGTTTCAGAA
CAGTACAAGTAAAAGCCTTCTTATACACTGTTGTAAGATCTCATTTAGCCCCTAAGAAGA
TTTAGCGGATTTTCCTTGTTTCGAGAGAAGGTGTGATGTTATATTCAACCCATGCAGCAC
GTCTTCCTTCTATTGAGATGTTAGTTAGACAAATAAAATCACTGGGAAACATCAATATTT
CTTTTGGGAGATTTTCTTCTCGCCGCTGTATTCTAGAAATGTCGATCGCCATTTGTTTAT
GACAATCGAAACTCCCTTACCTCTTT

Homology of Contig U35_21616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45390.1	437	3e-97	protein\|expressed protein
Brachypodium v1_2	Bradi1g31830.2	439	3e-101
Arabidopsis v10	AT1G53645.1	523	7e-65	hydroxyproline-rich glycoprotein family protein \| chr1:20026434-20028587 REVERSE LENGTH=523