- Probe CUST_10774_PI390587928
- Source Contig U35_5637
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10774_PI390587928 | Hv_44K_v2 | AGGATCGATCTCGCCGGAATTTAGCCGTCATTTAGTCATAATTTCGATGCTCGTGGTCTT | 1554 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.035 | 1.106 | 1.919 | 1.248 | 1.194 |
| Raw | 74.473 | 414.753 | 12471.603 | 31464.167 | 7569.090 | 7895.133 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_34286.1 | 773 | 2e-24 | 622 - 681 | 100 | 60 / 60 | plus | ABC10883 ABC12036 |
| MLOC | AK374393 | 2787 | 3e-22 | 2630 - 2688 | 98 | 58 / 59 | plus | ABC10883 ABC12036 |
| JLOC1 | JLOC1_22087.1 | 817 | 8e-25 | 626 - 685 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12036 | 1696 | 3e-25 | 1555 - 1614 | 100 | 60 / 60 | plus | ABC12036 |
| Harvest35 | U35_5637 | 1696 | 3e-25 | 1555 - 1614 | 100 | 60 / 60 | plus |
Contig Sequence (1696 bp)
>U35_5637 1696 Hv_44K_v2 CCGCACCCCGACGAGCGCGTGGAGTACGAGTTCTGGACCAACAGCAACGACGAGTGCGGC GCCAAGTGCGACATGCAGATGAACTTCGTCCGCGACTTCCGCGGCGTGGCGCAGGTGCTG GAGCAGCGCGGCTACACCCAGTTCGCGCCGCACTACATCACCTGGTACTGCCCGGAGGCC TTCGTGCTGAGCGCGCAGTGCCGGTCGCAGTGCATCAACCACGGCCGCTACTGCGCCCCC GACCCGGAGCAGGACTTCACCACCGGGTACGACGGCAAGGACGTCGTCGTCCAGAACTTG ATCCAGATCTGCCTCTTCAAGGTGGCCAACGAGAGCCGCAAGCCGTGGCTGTGGTGGGAC TACGTGCATGATTTTGCCATCAGGTGCCCGATGAAGGAGAAGAAGTACACCACCGAGTGC GCTCGTGGTGTGATCAAGTCGCTTGGGATGGACACTGACAAGATTACCAAGTGCGTCGGA GACCCCGACGCCGATGAGGACAATCCGGTGCTCAAGGCAGAGCAAGATGCTCAAATTGGT CATGGTGCTCGAGGGGATGTTACCATACTGCCGACTTTCGTCGTCAATAACAGACAGTAC AGAGGGAAACTGGATAAAAGGGCGGTGCTACGAGCGATATGTTCGGGATTTGAGGAGACA ACTGAACCTGATATCTGTTTGACTCAAGACATACAAACAAACCAGTGCTTGGAAAACAAT GGAGGTTGCTGGCTGGACAAGAACACTAATTTCACTGCGTGCAAGGATACCTTCCGTGGT CGAGTTTGTGAGTGCCCGGTTGTGAATGGTGTAAAGTTTGTCGGCGACGGGTACACCCAC TGTGAATCTTCCGGTGTCGGTCGATGCCAAATCAACAATGGGGGCTGCTGGAAGGAGACC AGGAACGGCAAGTCTGTCTCGGCATGCTCGAATGAGCAAACCAAAGGCTGCAAATGTCCA CAAGGCTTCAAGGGTGACGGCGTACACGGTTGCGAAGATGTTGATGAATGCAAAGAGAGG CTCTTCTGCCAGTGCAAGGACTGCAGCTGTGAGAACACATGGGGAAGCTACGAGTGCGGC TGCGGTGGTAGCAACATGCTGTACATGAGAGAGCACGACACTTGCATCAGCAAAGTGGCG ACTTCGTCGGTGGGCTGGGGGTTCCTGTGGGTCATCTTCTTCGGCCTCGGCTTCGCGGGA GTCGGAGCATACGCCGTCTACAAATATCGGCTACGGAGCTACATGGATTCAGAGATCCGC GCGATCATGGCGCAGTACATGCCGCTGGAGAACCAGGAGACGTCGAGCCACCAACGGCAT GTGGAGCACGCCGACATCTGAGACGGCCGAGGGTTTTTGCATACGGATCGAGCAGCGTCA TAAGAGCCAAAGTCTTTCTCGTCGCAGTCCGTGGTTGGTGGCATCTCGTCGGGTTTGGAG CTGCAGTTTTGAATTTCCAGAGGGTTGGTTCGTGGTTAGCGTATATGATCCCGAAAGACG AAATGCTCTTCTCTTTNTTTCTCTTTCTGAAGACGAAACTTTGAGGACAGGTTTAGGATC GATCTCGCCGGAATTTAGCCGTCATTTAGTCATAATTTCGATGCTCGTGGTCTTGNNCAG CGTGATGACATTGTGTAAATACTGCTGTTCGTTCGGACTGAATCGTGTTNGCTGCCCTTT NATAAAAAAAAAAAAA
Homology of Contig U35_5637 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g48229.1 | 627 | 0.0 | protein|vacuolar-sorting receptor precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g17670.1 | 614 | 0.0 | |
| Arabidopsis v10 | AT3G52850.1 | 623 | 0.0 | | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623 |