- Probe CUST_26290_PI390587928
- Source Contig U35_44939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26290_PI390587928 | Hv_44K_v2 | TACTTCCCTTTCTATATATAGAAACAAGAGAATCATATGGTCTGTACAAAGCAGGCCGCA | 379 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.252 | 0.691 | 1.250 | 1.542 | 1.065 | 1.224 |
| Raw | 20.864 | 91.025 | 141.971 | 275.322 | 65.284 | 83.673 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53134.2 | 7026 | 2e-24 | 4565 - 4624 | 100 | 60 / 60 | plus | ABC12036 ABC14582 ABC16182 ABC16183 |
| MLOC | MLOC_53134.4 | 1915 | 2e-24 | 1721 - 1780 | 100 | 60 / 60 | plus | ABC16182 ABC16183 |
| MLOC | MLOC_53134.3 | 2703 | 2e-24 | 2389 - 2448 | 100 | 60 / 60 | plus | ABC12036 ABC16182 ABC16183 |
| MLOC | MLOC_53134.1 | 4308 | 2e-24 | 2313 - 2372 | 100 | 60 / 60 | plus | ABC12036 ABC14582 ABC16182 ABC16183 |
| JLOC1 | JLOC1_34106.2 | 2397 | 8e-25 | 2252 - 2311 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_34106.1 | 1985 | 8e-25 | 1840 - 1899 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_34105.1 | 3328 | 8e-25 | 2316 - 2375 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43218 | 449 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16182 | 656 | 3e-25 | 389 - 448 | 100 | 60 / 60 | plus | ABC16182 |
| Harvest21 | ABC16183 | 750 | 8e-21 | 510 - 568 | 97 | 57 / 59 | plus | ABC16183 |
| Harvest35 | U35_46314 | 657 | 3e-25 | 209 - 268 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_44939 | 449 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7421 | 750 | 8e-21 | 510 - 568 | 97 | 57 / 59 | plus |
Contig Sequence (449 bp)
>U35_44939 449 Hv_44K_v2 GAGACGAACGAGTGCCTGCACCGGAACGGCGGGTGCTGGCGGGACGAGGCGACGAACGCG ACGGCGTGCAGGGACACGTACCGGGGCAGGGTCTGCGAGTGCCCCGTGGTGAACGGCGTC CTCGCCGTGTCCTGCGCCGCCGGCCTGGGGGTCGCCGGCTTCGTCTTCTACAAGTACAGG CTCAGGTCGTACATGGACTCGGAGATCATGGCCATCATGTCCCAGTACATGCCGCTCGAC AGCCAGAACAACGAGCACCAGCCGCTCCGGCAGCATGCTCCAGACGCCTAGAGGCAATGG ATGGAAATGGATCTGGAAATGGCAGCTTACAGAGTTTTCAAAGCTATCATGCTTTTCAAT TATTATTATTTTTGGTTACTACTTCCCTTTCTATATATAGAAACAAGAGAATCATATGGT CTGTACAAAGCAGGCCGCANGGGTGAGCT
Homology of Contig U35_44939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |