barSeed - Barley Seed Development Database

Probe ABC11577

Source Contig ABC11577

barSeed

Links

Affymetrix Source Sequence (1353 bp)

>ABC11577 1353
CCGAGTCGCACCTACGGACGATCAAGGCCGCCGTCTCGCCCAAGCCCATCGTCATGAGGG
CCGAGTACGCGCACTGCCCCAACCTCACCATCATCGACACCCCAGGTTTCGTGCTTAAGG
CCAAGAAAGGTGAGCCGGAGAGGACGCCTGAGGAGATCCTGTCGATGGTGAAGACACTAG
CGAGCCCGCCCCACCGCCTCATTCTGTTCCTCCAGCAGAGCAGCGTCGAGTGGTGCTCTT
CGCTCTGGCTCGATGCAATCAGAGAGATCGATCCCACTTTCAGGCGCACCATGATAGTCA
TCTCCAAGTTTGACAACCGACTCAAGGAATTTACCGAAAGGTGGGAGGTCGATAGCTACC
TGAGCGCAAGCGGTTACCTTGGGGACAATATCCACCCATTCTTTGTGGCTCTTCCAAAGG
ACCGAGGAACCATCTCCAATGACGAGTTCCGGCGGCAAATATGTCAGGTAGATATTGATG
TGCTGCGACACTTGCGTGATGGTGTGAAAGGGGGTTTCAATGAAGACAAGTTTGCTCCGT
ACATTGGGTTTAGCTGTCTCAGGAAGTATCTGGAGTCTGAACTTCAGAAGAGGTACAAAT
AAGCAGCTCCAGCCACCCTAGCATTGTTGGAGCAGAGATGCAGTGATGTCTCAGTGGACC
TATCCAGACTGGACTCCAAACTGCAAGCAACCTCTGACGTATCTCAGCGTGCATTACTTG
ATGGAGCAGCTGATCCAGCCCCAGAGGTGTGGGGGGAAACTACTGAAGAGGAGCAAATTC
ACAGTGGTATTGACAACTGGCCTAGCACCAGCGTTCCTGTAAAACCTCCCCACTCCAGCC
TTAAGCTGTATGGTGGTGCGGCTTTTGAGAGGGTAATGCACGAATTCCGCTCTGCGACAT
ATTCCATGGAGTGCCCACAGGTGTCAAGAGAGAAGGTTGCGAACATATTACTTGCCCATG
CTGGAAGAGGTGGAAGCAGTGGGATGACTGAGGCAGCTGCTGAGATAGCACGCGCGGCTG
CACGATCATGGCTTGCTCCTCTTACTGAAACTACATGTGATCGGCTTGCATTTGTCCTGC
AAAGCTTATTTGACCTTGCAATGGAGCGCAACCGCACTGATGATTCAAGATATCAAAATG
TTGAAAATATGGATGGATATGTTGGCTTCCTTGCTGCTCTCCGGTGCTCATATTATAAGT
TTGTCAAGGATTTGTCCAAGCAGTGCAAGCAGATAGTAAGACATCACCTTGATTCAGTCA
CGAGCCCCTACTCCCATATTTGTTATGAGAGCGACTTTCTCGGTGGCGTTGGATCTGTAG
CAAACACCCTTCACAGGTTTAATCAGTTCACTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369068	2790	0.0	1235 - 1881	98	636 / 647	CUST_8200_PI390587928 CUST_8199_PI390587928	ABC11577 ABC20681
AK355857	1352	0.0	530 - 1207	100	678 / 678	None	ABC11577 ABC39250
MLOC_45468.2	671	0.0	1 - 575	99	574 / 575	None	ABC11577
AK373317	3230	5e-108	565 - 804	96	231 / 240	CUST_8199_PI390587928 CUST_8320_PI390587928	ABC11577 ABC12905 ABC39250
AK376166	4867	1e-109	525 - 764	97	232 / 240	CUST_8199_PI390587928	ABC11577 ABC39250
MLOC_66849.2	1113	5e-113	224 - 445	100	222 / 222	CUST_8200_PI390587928	ABC11577 ABC20681
MLOC_66849.3	1198	5e-113	224 - 445	100	222 / 222	CUST_8200_PI390587928	ABC11577 ABC20681
MLOC_66849.1	1288	5e-113	329 - 550	100	222 / 222	CUST_8200_PI390587928	ABC11577 ABC20681
MLOC_53773.1	250	6e-107	1 - 250	95	238 / 251	None	ABC11577
MLOC_50748.1	284	9e-66	142 - 284	99	141 / 143	None	ABC11577
MLOC_50534.1	418	9e-56	294 - 418	98	123 / 125	None	ABC11577
MLOC_50534.2	530	9e-56	406 - 530	98	123 / 125	None	ABC11577
MLOC_45468.1	118	1e-53	1 - 118	99	117 / 118	None	ABC11577
MLOC_48934.1	263	3e-51	95 - 217	97	119 / 123	None	ABC11577