barSeed - Barley Seed Development Database

Probe CUST_8199_PI390587928

Source Contig U35_5346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8199_PI390587928	Hv_44K_v2	AAGATCGGCAATGCTTCATGTTGCTTCTATCTGCACCCATTTGCGTGCATTACTTGATGG	612	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	1.213	1.128	0.916	0.444	0.452
Raw	56.681	91.358	78.859	102.827	17.179	18.934

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373317	3230	2e-24	1595 - 1654	100	60 / 60	plus	ABC11577 ABC12905 ABC39250
MLOC	AK376166	4867	2e-24	1562 - 1621	100	60 / 60	plus	ABC11577 ABC39250
MLOC	AK369068	2790	7e-23	1193 - 1252	98	59 / 60	plus	ABC11577 ABC20681
Harvest21	ABC50677	636	3e-25	569 - 628	100	60 / 60	minus
Harvest21	ABC11578	1011	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_5346	1011	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_5346 1011 Hv_44K_v2
GATCCTTATATAGAATTTCTCAACATATACCAACCATATTGATAATTCAGAGATGTCAAC
GCAGTCATGTGAGATACAGCCCTATGCATATGTACCTGACGGTCCAGTCGAACCTTATCA
ACCTTCTTGGTCGATGAATTTGGGATACTATCACGACTCCACAGAAGATTTGACTCCCCA
GTATGATAATCATGCGTTCGAATCTGGTGAATATGGAGGCATGGCAAGCATATTCTCGTC
TTCCTCGTATCCTGAGCAAGTAGAAGTTTATGAGCAATCTTATGGTGATGAGTATGTCTC
CTTGGAACAAAATTTCCAGAGCAACTGGAATGCTTTTTTTGAAGATACCTCTGGAATCAC
TAAATTAGTAGATATTGATGTGCTGCGACACTTGCGTGATGGTGTGAAAGGGGGTTTCAA
TGAAGACAAGTTTGCTCCGTACATTGGGTTTAGCTGTCTCAGGAAGTATCTGGAGTCTGA
ACTTCAGAAGAGGTACAAATAAGCAGCTCCAGCCACCCTAGCATTGTTGGAGCAGAGATG
CAGTGATGTCTCAGTGGACCTATCCAGACTGGACTCCAAACTGCAAGCAACCTCTGACGT
ATCTCAGGTGAGAAGATCGGCAATGCTTCATGTTGCTTCTATCTGCACCCATTTGCGTGC
ATTACTTGATGGAGCAGCTGATCCAGCCCCAGAGGTGTGGGGGGAAACTACTGAAGAGGA
GCAAATTCACAGTGGTATTGACAACTGGCCTAGCACCAGCGTTCCTGTAAAACCTCCCCA
CTCCAGCCTTAAGCTGTATGGTGGTGCGGCTTTTGAGAGGGTAATGCACGAATTCCGCTC
TGCGACATATTCCATGGAGTGCCCACAGGTGTCAAGAGAGAAGGTTGCGAACATATTACT
TGCCCATGCTGGAAGAGGTGGAAGCAGTGGGATGACTGAGGCAGCTGCTGAGATAGCACG
CGCGGCTGCACGATCATGGCTTGCTCCTCTTACTGAAACTACATGTGATCG

Homology of Contig U35_5346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54420.1	823	9e-108	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi2g49747.1	822	3e-111
Arabidopsis v10	AT1G53140.1	817	8e-85	\| Symbols: DRP5A \| Dynamin related protein 5A \| chr1:19799271-19802441 FORWARD LENGTH=817