barSeed - Barley Seed Development Database

Probe ABC10269

Source Contig ABC10269

barSeed

Links

Affymetrix Source Sequence (1199 bp)

>ABC10269 1199
GGGCCCCCCNCTTCTCTCATCCCCCCACCATCCCAATCCGACCAAACCCTAGGCAATCTG
CCGGCCATGGCGATGTCGGATCTCGCGGCTGCGGTGATCTCCAAGGCCAACGGCGGCGTG
GACGGCGAGGAGCCGGTGGAGATCCGGGAGGTGTGGGCGGACAATCTGGAGGCGGAGTTC
GCGCTGATCCGCGACGTCGTCGACGAGTTCCCCTTCGTCGCCATGGACACCGAGTTCCCG
GGCATCGTCTGCCGCCCCGTCGGTGCCTTCCGCTCCCCGGCAGACTACAACTACGCCACC
CTCAAGGCCAACGTCGACATGCTGCACCTCATCCAGCTGGGGCTCACCTTCTCGGGCCCC
ACGGGCGAGCTCCCTGCCCTCGGCGCCGGACGCCGCCGATGCGTCTGGCAGTTCAACTTC
CGCGAGTTTGACGACGAGCGCGACATCTTCGCCACCGACTCCATCGAGCTGCTCCGCCAC
AGCGGCATCGACTTCCGCCGCAACGCCGAGCGCGGCGTCGACGCCCGCCGCTTTGCCGAG
CTGCTCATGTCCTCGGGCGTCGTGCTCAACGACGCCGTCTACTGGGTGACCTTCCATGCC
GGATACGACTTTGGCTACCTGCTCAAAATCCTCACCTGCAACAGCCTCCCCGACACACAG
GCTGGCTTCTTCAAGCTGATGAAGATATATTTCCCCACCGTCTATGACATCAAGCATCTC
ATGAAGTTCTGCAACAGCCTGCACGGAGGCCTGAACAAGCTTGCCGAGTTGCTCGATGTG
GAGCGTGTTGGAGAGTCACACCAGGCCGGGTCCGACAGCCTGGTCACGTCTTGTGCGTTC
TGGAAACTCAAGGATTCCTTCTTTGCTGGATCAACTGAGAAATATGCTGGCGTGCTGTAT
GGGCTCAACGCAGAGAATGGTGTCAGTGCGCATTGATGGATGATGCTCCCTTTGAATAGC
TCTGTGAATGGGTTGATTTAGGACAGAAAGAGGTGGCGAGTGAGCTAGCAGGCAAACTGA
TGACCAAATATGTAGGTTTAGCTTGTCTCACTCAGTTAGTCAATTCCATTTTGTTGGATG
TAATTTGAATGTAGTGTTTTTCAGTTATTCCCATTGAACTAGTGTTTTCTACTTATGCTG
TTAGCTTTCTCTTGAATATTACTTGAATAGAAAAGTATCACCTCTATAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_10922.4	3242	6e-87	1394 - 1631	91	224 / 246	CUST_17890_PI390587928 CUST_30103_PI390587928	ABC04416 ABC08901 ABC08902 ABC10269
MLOC_10922.1	3332	0.0	2255 - 3277	100	1023 / 1023	CUST_30103_PI390587928	ABC04416 ABC08901 ABC08902 ABC10269
MLOC_10922.3	1379	0.0	304 - 1326	99	1021 / 1023	CUST_30103_PI390587928	ABC04416 ABC08901 ABC08902 ABC10269
MLOC_58569.3	1252	2e-146	290 - 1057	79	617 / 779	None	ABC04416 ABC10269 ABC42882
MLOC_58569.4	1254	2e-146	290 - 1057	79	617 / 779	None	ABC04416 ABC10269 ABC42882
MLOC_58569.1	1995	2e-146	317 - 1084	79	617 / 779	CUST_23615_PI390587928	ABC04416 ABC10269 ABC42882
MLOC_58569.5	814	7e-131	34 - 764	79	584 / 743	None	ABC04416 ABC10269 ABC42882
MLOC_16489.1	1558	1e-83	570 - 1260	75	534 / 708	CUST_3309_PI390587928 CUST_3310_PI390587928	ABC08901 ABC08902 ABC10269
AK252542.1	1296	6e-82	137 - 827	75	533 / 708	CUST_3310_PI390587928 CUST_3309_PI390587928	ABC08901 ABC08902 ABC10269
MLOC_16489.2	691	4e-69	144 - 589	78	356 / 457	None	ABC08901 ABC08902 ABC10269