- Probe CUST_30103_PI390587928
- Source Contig U35_47730
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_30103_PI390587928 | Hv_44K_v2 | ACAACTACGCCACCCTCAAGGCCAACGACGACATGCTGCACCTCATCCAGCTGGGGCTCA | 273 | GeneList: skyblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.513 | 0.660 | 1.791 | 1.968 | 0.994 | 0.942 |
Raw | 188.709 | 379.642 | 903.788 | 1517.258 | 283.259 | 280.358 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_10922.4 | 3242 | 7e-23 | 2852 - 2911 | 98 | 59 / 60 | minus | ABC04416 ABC08901 ABC08902 ABC10269 |
MLOC | MLOC_10922.3 | 1379 | 7e-23 | 991 - 1050 | 98 | 59 / 60 | minus | ABC04416 ABC08901 ABC08902 ABC10269 |
MLOC | MLOC_10922.1 | 3332 | 7e-23 | 2942 - 3001 | 98 | 59 / 60 | minus | ABC04416 ABC08901 ABC08902 ABC10269 |
JLOC1 | JLOC1_7187.2 | 1644 | 4e-23 | 330 - 389 | 98 | 59 / 60 | plus | |
JLOC1 | JLOC1_7189.1 | 2293 | 4e-23 | 1905 - 1964 | 98 | 59 / 60 | minus | |
JLOC1 | JLOC1_7187.1 | 1508 | 4e-23 | 330 - 389 | 98 | 59 / 60 | plus | |
Harvest21 | ABC49077 | 399 | 3e-25 | 274 - 333 | 100 | 60 / 60 | plus | |
Harvest21 | ABC10269 | 1199 | 1e-23 | 287 - 346 | 98 | 59 / 60 | plus | ABC10269 |
Harvest35 | U35_47730 | 399 | 3e-25 | 274 - 333 | 100 | 60 / 60 | plus | |
Harvest35 | U35_4521 | 1168 | 1e-23 | 256 - 315 | 98 | 59 / 60 | plus |
Contig Sequence (399 bp)
>U35_47730 399 Hv_44K_v2 GCAAAAATCTCCCCCCATCCCAATCCGACCAAACCCTAGGCAATCTGCCGGCCATGGCGA TGTCGGATCTCGCGGCTGCGGTGATCTTTTTTGCCAACGGCGGCGTGGACGGCGAGGAGC CGGAGGAGATCCGGGTGGTGCTTGCGGACAANCNGGAGGTTTTTTTCGCGCTGATCCGCG ACGTCGTCGACGAGNNCCCCTTCGTCGCCATGGACACCGAGTTCCCCCGCATCGTCTGCC GCCCCGCCGGTGCCTTCCGCTCCCCGGCAGACTACAACTACGCCACCCTCAAGGCCAACG ACGACATGCTGCACCTCATCCAGCTGGGGCTCACCTTCTCGGGCCCCACGGGCGAGCTCC CTGCCCTCGGCGCCGGACGCCGCCGATGCGTCTGGCAGT
Homology of Contig U35_47730 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os02g55300.1 | 296 | 2e-52 | protein|CAF1 family ribonuclease containing protein, putative, expressed |
Brachypodium v1_2 | Bradi3g54110.1 | 296 | 5e-56 | |
Arabidopsis v10 | None |