barSeed - Barley Seed Development Database

Probe ABC10099

Source Contig ABC10099

barSeed

Links

Affymetrix Source Sequence (1407 bp)

>ABC10099 1407
GACACACTATACTTGGGACTGGTGAGCTATATCTAGATTCTATAATGAAGGACCTCAGAG
AGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTTGTGACATTTTGTGAAACAG
TTGTTGATACTTCCTCTATGAAATGTTTTGCTGAAACACCCAACAAGAGGAACAAAATTA
CCATGTTAGCTGAACCACTAGAGAAGGGCTTGGCAGAAGATATAGAGAATGGCCTTGTCA
GCCTTGACTCAAGGCAGAAAGAAGTCACCGACTTCTTTCGCCAACGATACCAGTGGGATG
TGCTTGCAGCAAGGTCAATATGGGCTTTTGGACCCGACAAGCAGGGTCCTAACATTCTAC
TGGATGACTCTCTTTCGGTTGAGGTGGATAAGAACTTGCTAAATGCAGTCAAAGATTCAA
TTGTTCAAGGGTTTCAGTGGGGTGCTAGAGAAGGCCCCTTGTGTGATGAACCAATTAGGA
ATGTGAAGTTCAAGATCCTAAATGCAAATATCGCTCCAGAACCACTGCACCGTGGTGGCG
GCCAAATAATCCCCACAGCTCGTCGGGTTGTCTACTCAGCATTTCTGATGGCTAATCCTC
GACTTATGGAGCCTGTTTATTATATTGAGATCCAAACTCCAATTGACTGTGTATCTGCTA
TATATACGGTTCTGTCACGGCGACGTGGCCATGTGACAGCCGATGTACCCAAGCCAGGCA
CTCCAGTTTACGTTGTTAAGGCATTTTTACCTGTCATCGAGTCTTTTGGGTTTGAGACAG
ATCTCAGATACCATACACAGGGGCAAGCATTTTGTGTGTCAGTGTTTGACCACTGGGCCA
TTGTTCCTGGCGATCCTCTTGACAAGGGCATTGTCCTCCGGCCTCTGGAACCGGCACCCA
TCCAACACCTTGCCCGTGAGTTCATGGTGAAGACCAGGCGAAGGAAGGGCATGAGCGAGG
ATGTTAGCATCAACAAGTTCTTTGACGAGGCCATGATGAACGAGCTGGCGCAACAGACTG
CAGATATCAACTTGATGATGTAGTTTGATGATGGAAGCCCTTGCAATTGTCCATTGTCCT
TTTGCACTGGGAACATATCACTTCCATGGGGCTATCATGACGTGATTTTCAAGGAGACGC
AATTTGCAGCATTTTGATGGTTGGGTATTATTTATAACGGATCATTGTAGACCAAGTACC
ATTTGTAGTCATGTATGTACCATCGCTCTAACATCTACGTCGTCTAACCAGTTAGTGTAA
CCATCGACCGAGAGCTGAGACTGGTGTTGAATTATGATATGCGATGACATCTCCAGGGAT
GATGATACCTTTTCTTGTTTGATTTTTTCTTTACATACTACAACCACTGTAGCACTGAGC
ATTTTTTCAAGATTCTGGAGGAATAGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK365134	1728	0.0	319 - 1723	99	1405 / 1406	CUST_6509_PI390587928	ABC10099 ABC24975
MLOC_35190.1	698	0.0	1 - 698	99	696 / 698	CUST_6509_PI390587928	ABC10099 ABC24975
MLOC_49701.1	2625	0.0	190 - 533	100	344 / 344	CUST_17378_PI390587928 CUST_6676_PI390587928	ABC10099
MLOC_50097.1	315	8e-146	1 - 311	97	301 / 311	None	ABC10099
MLOC_50097.2	331	1e-144	1 - 309	97	299 / 309	None	ABC10099
MLOC_6916.2	266	2e-131	5 - 265	99	259 / 261	None	ABC10099
MLOC_6916.1	526	1e-103	319 - 526	99	207 / 208	None	ABC10099
MLOC_34114.1	555	4e-69	241 - 410	95	162 / 171	None	ABC10099 ABC24975
MLOC_40578.1	746	9e-66	319 - 485	94	158 / 168	None	ABC10099 ABC24975
MLOC_29330.3	1354	6e-63	1175 - 1341	92	155 / 168	None	ABC10099 ABC24975
MLOC_28471.1	153	3e-61	1 - 150	95	143 / 150	None	ABC10099
MLOC_25914.1	339	9e-51	215 - 339	96	120 / 125	None	ABC10099 ABC24975