barSeed - Barley Seed Development Database

Probe CUST_6509_PI390587928

Source Contig U35_4439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6509_PI390587928	Hv_44K_v2	GTACCATTTGTAGTCATGTATGTACCATCGCTCTAACATCTACGTCGTCTAACCAGTTAG	1195	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.597	1.632	1.084	0.790	0.257	0.284
Raw	2782.717	4501.573	2600.267	3055.747	341.012	409.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365134	1728	2e-24	1513 - 1572	100	60 / 60	plus	ABC10099 ABC24975
MLOC	MLOC_35190.1	698	2e-24	145 - 204	100	60 / 60	minus	ABC10099 ABC24975
JLOC1	JLOC1_22737.1	837	8e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC49992	300	3e-25	132 - 191	100	60 / 60	minus
Harvest21	ABC10099	1407	3e-25	1196 - 1255	100	60 / 60	plus	ABC10099
Harvest35	U35_4439	1468	3e-25	1196 - 1255	100	60 / 60	plus

Contig Sequence (1468 bp)

>U35_4439 1468 Hv_44K_v2
GACACACTATACTTGGGACTGGTGAGCTATATCTAGATTCTATAATGAAGGACCTCAGAG
AGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTTGTGACATTTTGTGAAACAG
TTGTTGATACTTCCTCTATGAAATGTTTTGCTGAAACACCCAACAAGAGGAACAAAATTA
CCATGTTAGCTGAACCACTAGAGAAGGGCTTGGCAGAAGATATAGAGAATGGCCTTGTCA
GCCTTGACTCAAGGCAGAAAGAAGTCACCGACTTCTTTCGCCAACGATACCAGTGGGATG
TGCTTGCAGCAAGGTCAATATGGGCTTTTGGACCCGACAAGCAGGGTCCTAACATTCTAC
TGGATGACTCTCTTTCGGTTGAGGTGGATAAGAACTTGCTAAATGCAGTCAAAGATTCAA
TTGTTCAAGGGTTTCAGTGGGGTGCTAGAGAAGGCCCCTTGTGTGATGAACCAATTAGGA
ATGTGAAGTTCAAGATCCTAAATGCAAATATCGCTCCAGAACCACTGCACCGTGGTGGCG
GCCAAATAATCCCCACAGCTCGTCGGGTTGTCTACTCAGCATTTCTGATGGCTAATCCTC
GACTTATGGAGCCTGTTTATTATATTGAGATCCAAACTCCAATTGACTGTGTATCTGCTA
TATATACGGTTCTGTCACGGCGACGTGGCCATGTGACAGCCGATGTACCCAAGCCAGGCA
CTCCAGTTTACGTTGTTAAGGCATTTTTACCTGTCATCGAGTCTTTTGGGTTTGAGACAG
ATCTCAGATACCATACACAGGGGCAAGCATTTTGTGTGTCAGTGTTTGACCACTGGGCCA
TTGTTCCTGGCGATCCTCTTGACAAGGGCATTGTCCTCCGGCCTCTGGAACCGGCACCCA
TCCAACACCTTGCCCGTGAGTTCATGGTGAAGACCAGGCGAAGGAAGGGCATGAGCGAGG
ATGTTAGCATCAACAAGTTCTTTGACGAGGCCATGATGAACGAGCTGGCGCAACAGACTG
CAGATATCAACTTGATGATGTAGTTTGATGATGGAAGCCCTTGCAATTGTCCATTGTCCT
TTTGCACTGGGAACATATCACTTCCATGGGGCTATCATGACGTGATTTTCAAGGAGACGC
AATTTGCAGCATTTTGATGGTTGGGTATTATTTATAACGGATCATTGTAGACCAAGTACC
ATTTGTAGTCATGTATGTACCATCGCTCTAACATCTACGTCGTCTAACCAGTTAGTGTAA
CCATCGACCGAGAGCTGAGACTGGTGTTGAATTATGATATGCGATGACATCTCCAGGGAT
GATGATACCTTTTCTTGTTTGATTTTTTCTTTACATACTACAACCACTGTAGCACTGAGC
ATTTTTTCAAGATTTTGGAGGATAGTTTTGTATCTTGCCCTGCCTATTTAATCTGTGTTT
TTATCAGGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g40600.1	998	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi1g36340.1	996
Arabidopsis v10	AT1G06220.2	987	\| Symbols: MEE5 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:1900524-1904583 FORWARD LENGTH=987