barSeed - Barley Seed Development Database

Probe ABC09660

Source Contig ABC09660

barSeed

Links

Affymetrix Source Sequence (1247 bp)

>ABC09660 1247
GGGATAAAGCTACGGCTAAAATCCTAAAACCTCCCGTCTGAAAGGAAGGCAAGAAAATGG
CAGCACCACCTCTCAGCCTTGCACGCCGCGTCGCCGGCGCCTCTTCCCCAGCCACCGCGG
CGCATTCCTCCTCCCGTTCCCGTTACTTTCGTCCTTGCCTGCTCCCTTCAAAGCGGTGGA
GTGGGGTGGTGAAGATGGGGGCGGCAGTGGGAGGCGGGCAGGGGGGCGAGGAGGAGGAGA
CGAGGCAGGCCAAGGAGATGGCCGCCGCCAGGAGGCGCTGGGAGACGCTGATCAGGGAGC
AGAAGATTAAGACGCTTACACCAAGGGAAGCCGGCTATACATTCAAACTCACCGACAAGG
TCCTTCTGGATGTCAGGCCTTCAAATGAGCGTCAAAAGGCCTGGGTGAAAGGTTCTACCT
GGGTTCCTGTATTCGACGTGGATACGTCATCTGATTTGAATGGACTCAGCAAGAAAGCAT
TCAACTTTATGATTGGTGGCTGGTGGAGTGGCAGCTCAACAATGTCATTCAATAAGAACT
TTGTACAACAGGTCGAGGAGAAGTTCTCAAAAGATACAGATATCATCCTAGTATGCCAGA
AGGGACTGAGATCAATTGCTGCCGCAGAGCAACTTTACAATGGTGGCTTCGAAAATTTAT
TCTGGGTACAAGGAGGATTGGAAGCTGCTGAAGAGGAGGACTTTGAGCGGGAAGGTTCCC
AACCATTCAAGCTTGCTGGTATTGGTGGGGTTTCTGAATTTTTTGGCTGGACGGATCAGC
AACGTGCACAGGCTGCAAAGGAAGGATGGGGATATCGGCTGCTCTTCACGGGCCGATTGG
TTGGGGCAATTGTGCTAGCAGATGCTCTGTTCGTGGGTGCTCAAAGTATTGGCCCTCTAC
TTCAACAGTTACAGCCTCATTAACTGATCGATTCCGAGGAAGATGCTGTGGTGTTGAGGC
TAACTTAAAGGCGGCATTTCTGCGTTCATCTTGAGAGAGACCCCAAACAAGTGCACGAGG
AGACAATTGCCTGCCATGTTAGCACACAGAGACTAAATGCTGTCTTGTAGAAGTATCTAG
TTATGACCTCTTATCGAAAAAAAAAATCTAGTTATGAACTAGAGCCTCATTTGGACTTGA
TGAGTTGCACAAATTCGGGCCAAACAGGATAATCTGATGATCTTCGTGGAATTGTTCAGT
TGAAAATCCTGTTGGAAGATCATGAGTCTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_65057.6	1357	0.0	4 - 1237	100	1234 / 1234	CUST_92_PI415269222 CUST_29057_PI390587928	ABC09660
MLOC_65057.1	2239	0.0	1029 - 2239	100	1211 / 1211	CUST_29057_PI390587928 CUST_9111_PI390587928 CUST_92_PI415269222	ABC09660 ABC11674
MLOC_65057.4	4324	8e-86	93 - 265	100	173 / 173	CUST_35015_PI390587928 CUST_29057_PI390587928 CUST_13505_PI390587928 CUST_92_PI415269222	ABC05435 ABC09660
MLOC_65057.5	3569	8e-86	93 - 265	100	173 / 173	CUST_92_PI415269222 CUST_29057_PI390587928	ABC05435 ABC09660
AK358865	1115	0.0	74 - 1115	99	1042 / 1047	CUST_92_PI415269222 CUST_29057_PI390587928	ABC09660
MLOC_65057.3	1215	8e-86	134 - 306	100	173 / 173	None	ABC09660