barSeed - Barley Seed Development Database

Probe CUST_29057_PI390587928

Source Contig U35_17975

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29057_PI390587928	Hv_44K_v2	CACACAGAGACTAAATGCTGTCTTGTAGAAGTATCTAGTTATGACCTCTTATCGAAAAAA	1042	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.499	3.364	1.246	0.698	0.284	0.427
Raw	297.898	459.525	144.631	133.178	18.188	30.073

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358865	1115	2e-24	940 - 999	100	60 / 60	plus	ABC09660
MLOC	MLOC_65057.6	1357	2e-24	1046 - 1105	100	60 / 60	plus	ABC09660
MLOC	MLOC_65057.4	4324	2e-24	1211 - 1270	100	60 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.5	3569	2e-24	1211 - 1270	100	60 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.1	2239	2e-24	2071 - 2130	100	60 / 60	plus	ABC09660 ABC11674
JLOC1	JLOC1_42780.1	2506	8e-25	2069 - 2128	100	60 / 60	plus
Harvest21	ABC09660	1247	3e-25	1043 - 1102	100	60 / 60	plus	ABC09660
Harvest35	U35_17975	1247	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (1247 bp)

>U35_17975 1247 Hv_44K_v2
GGGATAAAGCTACGGCTAAAATCCTAAAACCTCCCGTCTGAAAGGAAGGCAAGAAAATGG
CAGCACCACCTCTCAGCCTTGCACGCCGCGTCGCCGGCGCCTCTTCCCCAGCCACCGCGG
CGCATTCCTCCTCCCGTTCCCGTTACTTTCGTCCTTGCCTGCTCCCTTCAAAGCGGTGGA
GTGGGGTGGTGAAGATGGGGGCGGCAGTGGGAGGCGGGCAGGGGGGCGAGGAGGAGGAGA
CGAGGCAGGCCAAGGAGATGGCCGCCGCCAGGAGGCGCTGGGAGACGCTGATCAGGGAGC
AGAAGATTAAGACGCTTACACCAAGGGAAGCCGGCTATACATTCAAACTCACCGACAAGG
TCCTTCTGGATGTCAGGCCTTCAAATGAGCGTCAAAAGGCCTGGGTGAAAGGTTCTACCT
GGGTTCCTGTATTCGACGTGGATACGTCATCTGATTTGAATGGACTCAGCAAGAAAGCAT
TCAACTTTATGATTGGTGGCTGGTGGAGTGGCAGCTCAACAATGTCATTCAATAAGAACT
TTGTACAACAGGTCGAGGAGAAGTTCTCAAAAGATACAGATATCATCCTAGTATGCCAGA
AGGGACTGAGATCAATTGCTGCCGCAGAGCAACTTTACAATGGTGGCTTCGAAAATTTAT
TCTGGGTACAAGGAGGATTGGAAGCTGCTGAAGAGGAGGACTTTGAGCGGGAAGGTTCCC
AACCATTCAAGCTTGCTGGTATTGGTGGGGTTTCTGAATTTTTTGGCTGGACGGATCAGC
AACGTGCACAGGCTGCAAAGGAAGGATGGGGATATCGGCTGCTCTTCACGGGCCGATTGG
TTGGGGCAATTGTGCTAGCAGATGCTCTGTTCGTGGGTGCTCAAAGTATTGGCCCTCTAC
TTCAACAGTTACAGCCTCATTAACTGATCGATTCCGAGGAAGATGCTGTGGTGTTGAGGC
TAACTTAAAGGCGGCATTTCTGCGTTCATCTTGAGAGAGACCCCAAACAAGTGCACGAGG
AGACAATTGCCTGCCATGTTAGCACACAGAGACTAAATGCTGTCTTGTAGAAGTATCTAG
TTATGACCTCTTATCGAAAAAAAAAATCTAGTTATGAACTAGAGCCTCATTTGGACTTGA
TGAGTTGCACAAATTCGGGCCAAACAGGATAATCTGATGATCTTCGTGGAATTGTTCAGT
TGAAAATCCTGTTGGAAGATCATGAGTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38240.1	293	4e-139	protein\|rhodanese family protein, putative, expressed
Brachypodium v1_2	Bradi3g47740.1	285	1e-155
Arabidopsis v10	AT4G24750.1	292	2e-98	Rhodanese/Cell cycle control phosphatase superfamily protein \| chr4:12758422-12760749 REVERSE LENGTH=292