barSeed - Barley Seed Development Database

Probe CUST_92_PI415269222

Source Contig TA39284_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_92_PI415269222	Hv_44K_v2	GAGTTGCACAAATTCGGGCCAAACAGGATGATCTGATGATCTTCGTGGAATTGTTCAGTT	1119	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.812	3.132	1.192	0.723	0.262	0.390
Raw	360.348	648.656	208.570	207.658	25.675	41.241

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358865	1115	7e-23	1039 - 1098	98	59 / 60	plus	ABC09660
MLOC	MLOC_65057.6	1357	7e-23	1145 - 1204	98	59 / 60	plus	ABC09660
MLOC	MLOC_65057.4	4324	7e-23	1310 - 1369	98	59 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.5	3569	7e-23	1310 - 1369	98	59 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.1	2239	7e-23	2170 - 2229	98	59 / 60	plus	ABC09660 ABC11674
JLOC1	JLOC1_42780.1	2506	4e-23	2168 - 2227	98	59 / 60	plus
Harvest21	ABC09660	1247	1e-23	1142 - 1201	98	59 / 60	plus	ABC09660
Harvest35	U35_17975	1247	1e-23	1142 - 1201	98	59 / 60	plus
Harvest35	U35_33933	259	6e-22	179 - 238	97	58 / 60	plus

Contig Sequence (1182 bp)

>TA39284_4513 1182 Hv_44K_v2
CCTAAAACCTCCCGTCTGAAAGGAAGGCAAGAAAATGGCAGCACCACCTCTCAGCCTTGC
ACGCCGCGTCGCCGGCGCCTCTTCCCCAGCCACCGCGGCGCATTCCTCCTCCCGTTCCCG
TTACTTTCGTCCTTGCCTGCTCCCTTCAAAGCGGTGGAGTGGGGTGGTGAAGATGGGGGC
GGCAGTGGGAGGCGGGCAGGGGGGCGAGGAGGAGGAGACGAGGCAGGCCAAGGAGATGGC
CGCCGCCAGGAGGCGCTGGGAGACGCTGATCAGGGAGCAGAAGATTAAGACGCTTACACC
AAGGGAAGCCGGCTATACATTCAAACTCACCGACAAGGTCCTTCTGGATGTCAGGCCTTC
AAATGAGCGTCAAAAGGCCTGGGTGAAAGGTTCTACCTGGGTTCCTGTATTCGACGTGGA
TACGTCATCTGATTTGAATGGACTCAGCAAGAAAGCATTCAACTTTATGATTGGTGGCTG
GTGGAGTGGCAGCTCAACAATGTCATTCAATAAGAACTTTGTACAACAGGTCGAGGAGAA
GTTCTCAAAAGATACAGATATCATCCTAGTATGCCAGAAGGGACTGAGATCAATTGCTGC
CGCAGAGCAACTTTACAATGGTGGCTTCGAAAATTTATTCTGGGTACAAGGAGGATTGGA
AGCTGCTGAAGAGGAGGACTTTGAGCGGGAAGGTTCCCAACCATTCAAGCTTGCTGGTAT
TGGTGGGGTTTCTGAATTTTTTGGCTGGACGGATCAGCAACGTGCACAGGCTGCAAAGGA
AGGATGGGGATATCGGCTGCTCTTCACGGGCCGATTGGTTGGGGCAATTGTGCTAGCAGA
TGCTCTGTTCGTGGGTGCTCAAAGTATTGGCCCTCTACTTCAACAGTTACAGCCTCATTA
ACTGATCGATTCCGAGGAAGATGCTGTGGTGTTGAGGCTAACTTAAAGGCGGCATTTCTG
CGTTCATCTTGAGAGAGACCCCAAACAAGTGCACGAGGAGACAATTGCCTGCCATGTTAG
CACACAGAGACTAAATGCTGTCTTGTAGAAGTATCTAGTTATGACCTCTTATCGAAAAAA
AAAATCTAGTTATGAACTAGAGCCTCATTTGGACTTGATGAGTTGCACAAATTCGGGCCA
AACAGGATGATCTGATGATCTTCGTGGAATTGTTCAGTTGAG

Homology of Contig TA39284_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38240.1	293	2e-139	protein\|rhodanese family protein, putative, expressed
Brachypodium v1_2	Bradi3g47740.1	285	5e-156
Arabidopsis v10	AT4G24750.1	292	9e-99	Rhodanese/Cell cycle control phosphatase superfamily protein \| chr4:12758422-12760749 REVERSE LENGTH=292