barSeed - Barley Seed Development Database

Probe CUST_9111_PI390587928

Source Contig U35_18879

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9111_PI390587928	Hv_44K_v2	CGTTGTTCTGAATGCAATCCATCTGCGTTGATCAAATTATTGTTTGTGATACTTTTGAAC	2134	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.256	1.367	1.132	0.960	0.316	0.332
Raw	1259.930	2139.431	1556.737	2063.562	242.361	273.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367972	2337	2e-24	2205 - 2264	100	60 / 60	plus	ABC11674
MLOC	MLOC_65057.2	803	2e-24	715 - 774	100	60 / 60	plus	ABC11674
MLOC	MLOC_65057.1	2239	2e-24	741 - 800	100	60 / 60	plus	ABC09660 ABC11674
JLOC1	JLOC1_42780.1	2506	8e-25	739 - 798	100	60 / 60	plus
Harvest35	U35_18879	2218	3e-25	2135 - 2194	100	60 / 60	plus

Contig Sequence (2218 bp)

>U35_18879 2218 Hv_44K_v2
GGTCCGCCGCCCGCCGAGCACCTCCGTCGCGCGGCACCTCTTCAAGTTCCGGCCGGGCAG
GGCGTGCGCGCTGTCTCGCCGGCGACGACCGCCATGGCGTTCACGCGCCTGGAGCTGCGA
TGCCCCAGGGCGCTCGACCCCCGCCCGAGCTGGACCGTCGGCGAGGTCCTCACTGAGCTC
GACGCACTCGAAGCCACCCGCCGCGCCGCGCCCCCCACGCCCCTCAAGCAGCAGCCGGAG
TGGGCTAGCGGTGGCAGCGCGAGGAAGAAGGCCTTTGTGATGCGGATTGAGGAGGAAGAC
GACACGGACGAGGAAGACGATAATGAGGATGCCCGGGCTCTTGTGACCGGAGCCAGGTTC
TCATGTAATGATCTCGAATGCAGCGGCTTTGAAGAATCAGGGGATGAATTAGATAGCAGC
AGTACATCATACCACCTGATGGGGAAAAGGAGCACAGAGAAAAGCATCCTGCTCGAGCTG
GAACGCGATCATCATCTCAAAATTCAAGAGGAAGTTAGAAGCAAGTTATCTTCATTGGAG
GTATGCCACCAAAACGAAATCCAGAGAACAATCTCTGCATTTGCTCGACTTCAGAAATAT
GCGGAATCACGAAAAGAGATAGATAGAAGGCTAGATGTCCAATTCCAGAGAAAAATTGCA
GAAGTACTCGATAAACACTTATCTATGGTCCAAAGGGATCATGAACAGAAATCCCAGATT
GTGGAACGTAGAATAAGAGATGATGCAGCTGTTGAAGAAGCTAAAAGAAAGGAGCAATCT
ATGAAGGAAGAAAAAATAAAACAGGAAAGGGCCAGACAAGAAGCAGAGGCCAGACAGAAG
GCAACTGCAAAATTAGCAGCTGATGCACAGAAAGCAGCATATGAAGCTGCTCAAAAGGAA
GCTGTAGAAAAGGAAGCTGCTAAATTGAAGGCAGAAGCAGTTTCCACATCTAGCCAGATT
TCTCAAAACAGTCTTGCACATGCAACAATGGCAACCAATATTGAAATAATATCAGAATTA
CCAGGAATCAAAATTTATGCTGATAGGTCTGCGTTAGAAGCGGAATCCCGGAGGCGCGCA
TTACATGACCAAGTGCCATCAAACATTTACCTCAGCAAGGAGTATAGCCGATATGACCGA
CAAATTGGAAAATCTATTAGTAAACTTATGCCAACTACTGACAGTGTCAAAGCCAGGGCT
AGTGAGCTTATTAAAGCTTTAGATGGACAAGATTGTCCTCGTCCAATTGCTTGTCGTTTA
TTTGCAGACAAGATGATTTCAATAGTCAAGAGTCGGAACCCGACGGACAAGACCTTTGGA
AAATTGGCCTTTGCTTGTGGATATGTCATGCTACTAGTCATTAATCAGGTACCAGATGCA
ATGGATTATCTTCTGGCTGAGTTCAACAAAGTTTGCATGTACACAGTTCCAAAGCATCTG
CATGCTTTAAATGCACAAGCACGAAACACAGATTACTTCAGGCTTATTGGCTACCAAGAA
GAAGATGGAAAACTTCAGAGCACTGAGAAGTATTTGGTAAATGTTGTTGCATACATCAAA
CTGTATGCTGCCATGATTCAGACGGAAATCAAAGGTGTGCGGCATCCATATGGCTTAGCC
GAGGGATGGAAATGGCTTGCAATGTTCCTCAACACTCTCCCAGCGATCCCGGCCACTGCT
TTTGCTCTTCATGCTTTCCTCAAGGTGGCTGGTTTTGCGCTTCACAAGAAATATGGATCA
CAGTTCATGAAAATTCTAGATGTAATATCGCGGCACTTCATACCAGCTTTGAAAGCACAA
GGCTCGAAAGTTCAGCCAGAAGCTATCAATAATCTACAAAATTATCTGGATGACAAAATT
TATCTGGAGGAGCCAGAAGGGCAGTACCTCGCCCAGCAGCTGCTATCGAAAATGTTCTTG
TGAAGATTAACACCGGATTGGCTTGGAGCTATCAGCTGGTGCATCTATTTTGTCTGAGGG
AGAAACTGCATGGTCATAACTTATGGAGGAGCCCAAAATCGTCTTGAAGATTAACATGTT
CAGTAAATTAGAATAGAGGTGCCACTTGGTGCGATTTGTTGTGTGTACTATGTCTGTACT
ATGAGGTGCAAACCTTGTGTCAGTTTGAAGTCAACGTTGTTCTGAATGCAATCCATCTGC
GTTGATCAAATTATTGTTTGTGATACTTTTGAACACTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_18879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38250.1	613	0.0	protein\|EMB1745, putative, expressed
Brachypodium v1_2	Bradi2g11627.2	607	0.0
Arabidopsis v10	None