barSeed - Barley Seed Development Database

Probe ABC09278

Source Contig ABC09278

barSeed

Links

Affymetrix Source Sequence (1423 bp)

>ABC09278 1423
CCCGGGCTGCAGGTAGGAGTCAGGGAGAGAGTCGTGAGTATCCATCTCCATTGCCGAGCT
TGAAGATGGGGGAGAAGATGAGGATGACCAAGCTTTGGGCGCTTTCTCTTGTGGTTTTGG
TCCTCGCGGCGTCGGCGCCGAGCGTACCGGCGGTGCCTATCACCATCCTCACGTCCGCCG
TCGCCAAGGGAGCCGTGTGCATGGATGGTACGCCGCCGGCCTACCACATGGATCCGGGGT
CCGGTGCTGGGAAGAAGAGCTGGATCGTCAACCTAGAGGGAGGCGGATGGTGCGAGAGCG
TGATGGAGTGCATGTACCGCAAGGGCAGCCGCCTCGGCTCCTCGAACCTCATGGAGAGGC
AGCTGGAGTTCCGTGGCATCTTGAGCTCCAACCCCGCTGAGAACCCTGATTTCTACAGTT
GGAACCGGGTGATGGTCCGCTACTGCGACGGCGCGTCCTTCACCGGCGAAGGCTACAACG
CGGGCTCGAAGGTCTATTTCCGGGGCCAGCGCATTTGGAACGCCGTCATGCAGCACCTCC
TCTCCATTGGGATGTCGTCGGCGGATCAGGTGCTGCTGGCGGGCGGCTCCGCCGGGGGGC
TGTCGGCGATCCTGCACTGCGACCAGTTCGGCACCTTCTTCGCCGGCCGGAGCACCACCG
TCAAGTGTCTCGCCGACGCAGGACTCTTCCTGGACGCCGTCGACATCTCCGGCGGCCGTA
CTTTGAGATCCTATTTCGGAGGCATTGTAGCCACGCATGGGGTGGCTCAGAACCTGCCCA
GGAGTTGCACCGGTCATCTCGACGCCACCTCGTGCTTCTTCCCCCAGAATATAATCGGCA
GCATAAATACCCCCATCTTCCTGCTGAATGCAGCCTACGATACCTGGCAGATCCATGAAA
GCCTGGCCCCGGACGTAGCCGACCACAACGGCGCGTGGCGAGCCTGCAAGTCCAATCGTT
TAGCTTGCAACGCATCCCAGATGAAAGTCTTGCAAGCTTTCAGGGACCAGATGGTGGGAA
TTGTCCAAGGCTTGTCCCGCTCCAAGAGCTACGGCCTCTTCATCAACTCGTGCTTCACGC
ACGGCCAGTCCAAAGTCCCGGCTACTTGGAATGCAAATGGCTCTCCTACTATTCATAATA
AGAGCATTGCGAAATCTGTGAGTGACTGGTACTTTGGCCGGGCTGAAGTGAGGGCCATCG
ATTGCCCCTACCCCTGCGACCACACATGCCATCACGACATGTGAGAAGAGCTGCAGATTT
GATTAGTGTCTTGTACTATTTTTTGTCAACTCGTTCCAGAGAAGACAAATATGTGCATAT
CAAGGCTGGTGACTAATCACTGTACCGGCAGATGAGCTCAAGCACATCCTGCAAAAACTT
AATATCAAGATTGAGTAATTACAACCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249737.1	1431	0.0	20 - 1428	99	1398 / 1410	CUST_22258_PI390587928 CUST_22260_PI390587928	ABC09278
MLOC_55694.4	891	0.0	1 - 781	99	772 / 781	None	ABC09278
MLOC_55694.3	991	0.0	1 - 781	99	772 / 781	None	ABC09278
MLOC_55694.5	934	0.0	1 - 777	99	768 / 777	None	ABC09278
AK372620	1566	0.0	169 - 1266	86	948 / 1100	CUST_11292_PI390587928	ABC09278
MLOC_55693.1	653	0.0	32 - 628	99	595 / 597	CUST_22258_PI390587928 CUST_22260_PI390587928	ABC09278
MLOC_55694.6	800	0.0	1 - 616	99	607 / 616	None	ABC09278
MLOC_55694.2	936	4e-124	615 - 877	97	256 / 263	None	ABC09278
MLOC_55694.1	908	2e-126	615 - 881	97	260 / 267	None	ABC09278
MLOC_14456.1	605	5e-163	4 - 553	86	473 / 552	None	ABC09278