- Probe CUST_22258_PI390587928
- Source Contig U35_18221
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_22258_PI390587928 | Hv_44K_v2 | CAGATGAGCTCAAGCACATCCTGCAAAAACTTAATATCAAGATTGAGTAATTACAACCAA | 799 | GeneList: sienna3 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 3.866 | 1.581 | 0.884 | 1.230 | 0.637 | 0.723 |
Raw | 415.658 | 269.875 | 128.402 | 263.448 | 54.470 | 65.380 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK249737.1 | 1431 | 2e-24 | 1355 - 1414 | 100 | 60 / 60 | plus | ABC09278 |
MLOC | MLOC_55693.1 | 653 | 2e-24 | 32 - 91 | 100 | 60 / 60 | minus | ABC09278 |
JLOC1 | JLOC1_35961.5 | 1974 | 8e-25 | 1754 - 1813 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_35961.4 | 1715 | 8e-25 | 1495 - 1554 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_35961.3 | 1710 | 8e-25 | 1490 - 1549 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_35961.2 | 1600 | 8e-25 | 1380 - 1439 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_35961.1 | 1653 | 8e-25 | 1433 - 1492 | 100 | 60 / 60 | plus | |
Harvest21 | ABC09279 | 874 | 3e-25 | 800 - 859 | 100 | 60 / 60 | plus | |
Harvest21 | ABC09278 | 1423 | 3e-25 | 1349 - 1408 | 100 | 60 / 60 | plus | ABC09278 |
Harvest35 | U35_18221 | 874 | 3e-25 | 800 - 859 | 100 | 60 / 60 | plus | |
Harvest35 | U35_18220 | 1423 | 3e-25 | 1349 - 1408 | 100 | 60 / 60 | plus |
Contig Sequence (874 bp)
>U35_18221 874 Hv_44K_v2 TGAGTATCCATCTCCATTGCCGAGCTTGAAGATGGGGGAGAAGATGAGGATGACCAAGCT TTGGGCGCTTCCTCTTGTGGTTTTGGTCCTCGGGGCGTCGGCGCCGAGCGTACCGGCGGT GCCTATCACCATCCTCACGTCCGCCGTCGCCAAGGGGGCCGTGTGCATGGATGGTACGCC GCCGGCCTACCACATGGACCCGGGGTCCGGTGCAGGGAAGAAGAGCTGGATCGTCAACCT GGAGGGAGGCGGATGGTGCGAGAGCGTGATGGCGTGCATGTACCGCAAGGGCAGCCGCCT CGGCTCCTCGAACCTCATGGAGAGGCAGCTGGAGTTCCGTGGCATCTTGAGCTCCAACCC CGGACGTGGCCGACCACAACGGCACGTGGCGAGCCTGCAAGTCCAATCGTTTAGCTTGCA ACGCATCCCAGATGAAAGTCTTGCAAGCTTTCAGGGACCAGATGGTGGGAATTGTCCAAG GCTTGTCCCGCTCCAAGAGCTACGGCCTCTTCATCAACTCGTGCTTCACGCACGGCCAGT CCAAAGTCCCGGCTACTTGGAATGCAAATGGCTCTCCTACTATTCATAATAAGAGCATTG CGAAATCTGTGAGTGACTGGTACTTTGGCCGGGCTGAAGTGAGGGCCATCGATTGCCCCT ACCCCTGCGACCACACATGCCATCACGACATGTGAGAAGAGCTGCAGATTTGATTAGTGT CTTGTACTATTTTTTGTCAACTCGTTCCAGAGAAGACAAATATGTGCATATCAAGGCTGG TGACTAATCACTGTACCGGCAGATGAGCTCAAGCACATCCTGCAAAAACTTAATATCAAG ATTGAGTAATTACAACCAAAAAAAAAAAAAAAAA
Homology of Contig U35_18221 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi2g12057.1 | 406 | 4e-51 | |
Arabidopsis v10 | None |