barSeed - Barley Seed Development Database

Probe CUST_11292_PI390587928

Source Contig U35_11966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11292_PI390587928	Hv_44K_v2	ACTGATTTGATGGAGAAAAAGAAGGGAGAATATACATTACAGCTAGCAGAATGATTACTC	919	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.682	2.631	1.293	0.441	0.098	0.058
Raw	2335.093	2590.378	1087.904	560.473	45.496	30.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372620	1566	2e-24	1272 - 1331	100	60 / 60	plus	ABC09278
JLOC1	JLOC1_9880.1	1571	8e-25	1323 - 1382	100	60 / 60	plus
Harvest21	ABC24879	979	3e-25	920 - 979	100	60 / 60	plus
Harvest35	U35_11966	979	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_11966 979 Hv_44K_v2
GCTCGTCGGATCTCATGAACAAGGAGCTGATGTACTTCGGCGGCATCTTGAGCTCCAGCC
CCGCCGAGAACCCTGATTTCTTCAGCTGGAACCGGGTGATGATCCGGTACTGCGACGGCG
CGTCTTTCGCCGGCGAAGGCTACGACGCGGGCACGGGGCTCTTCTTCCGGGGCCAGCGCA
TATGGAACGCCGTCATGCAGCACCTCCTCTCCATCGGGATGTCCTCCGCGGATCAGGTGC
TGCTGACGGGGAGCTCCGCCGGGGCCCTGGCGGTGGTGCTGCACTGCGACCAGTTCGGCG
CCTTCTTCGCCGGCCGGGACACCACCGTCAAGTGCCTCGCCGACGCAGGATTCTTCCTCG
ACGCCGTCAACGTCGCCGGGGGGCGTACCTTGAGATCCTACTTCGGAGGCGTCGTGGCCA
CGCATGGGGTGGCTCAGAACCTGCCGACGAGTTGCACCGATCATCTGAACGCCACCTCGT
GCTTCTTCCCGCAGAATATAATCGGCGGCATAGATACCCCAATCTTCGTGCTGAATGCAG
CCTACGATACCTGGCAGATCCGGGAAAGCCTGGCCCCGGACGGAGCCGATCCCAGCGGCG
CCTGGCGAGCCTGCAAGTCCAATCGTTTAGCCTGCAACGAGTTACAGATGAACATCTTGC
AAGCTTTTAGGAACCAAATGGTGGTCACTGTGCTACGCGTCGTCTCCCGTTCCAGGAGCA
ACGGGTACTTCATAAACTCGTGCTTCACTCACGGCCAGACCGAGAACCCAGCTACTTGGA
ATGCATATGACTCTCCTGCTATTCAAAACAAGACAATCTGGAAATCTGTGGGTGACTGGT
ACTTTGGCCGGGCTGAAGTGAGGGCCATCGACTGCGCCTACCCCTGCGATTACACATGCT
ATCACGACATGGAGGACCAACTGATTTGATGGAGAAAAAGAAGGGAGAATATACATTACA
GCTAGCAGAATGATTACTC

Homology of Contig U35_11966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21630.1	419	1e-131	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g12057.1	406	1e-157
Arabidopsis v10	AT2G46930.1	416	3e-117	Pectinacetylesterase family protein \| chr2:19283625-19286090 FORWARD LENGTH=416