barSeed - Barley Seed Development Database

Probe CUST_22260_PI390587928

Source Contig U35_18220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22260_PI390587928	Hv_44K_v2	CGGCAGATGAGCTCAAGCACATCCTGCAAAAACTTAATATCAAGATTGAGTAATTACAAC	1345	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.661	1.504	0.869	1.307	0.706	0.686
Raw	599.844	390.102	194.094	429.741	91.847	94.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249737.1	1431	2e-24	1352 - 1411	100	60 / 60	plus	ABC09278
MLOC	MLOC_55693.1	653	2e-24	35 - 94	100	60 / 60	minus	ABC09278
JLOC1	JLOC1_35961.5	1974	8e-25	1751 - 1810	100	60 / 60	plus
JLOC1	JLOC1_35961.4	1715	8e-25	1492 - 1551	100	60 / 60	plus
JLOC1	JLOC1_35961.3	1710	8e-25	1487 - 1546	100	60 / 60	plus
JLOC1	JLOC1_35961.2	1600	8e-25	1377 - 1436	100	60 / 60	plus
JLOC1	JLOC1_35961.1	1653	8e-25	1430 - 1489	100	60 / 60	plus
Harvest21	ABC09279	874	3e-25	797 - 856	100	60 / 60	plus
Harvest21	ABC09278	1423	3e-25	1346 - 1405	100	60 / 60	plus	ABC09278
Harvest35	U35_18221	874	3e-25	797 - 856	100	60 / 60	plus
Harvest35	U35_18220	1423	3e-25	1346 - 1405	100	60 / 60	plus

Contig Sequence (1423 bp)

>U35_18220 1423 Hv_44K_v2
CCCGGGCTGCAGGTAGGAGTCAGGGAGAGAGTCGTGAGTATCCATCTCCATTGCCGAGCT
TGAAGATGGGGGAGAAGATGAGGATGACCAAGCTTTGGGCGCTTTCTCTTGTGGTTTTGG
TCCTCGCGGCGTCGGCGCCGAGCGTACCGGCGGTGCCTATCACCATCCTCACGTCCGCCG
TCGCCAAGGGAGCCGTGTGCATGGATGGTACGCCGCCGGCCTACCACATGGATCCGGGGT
CCGGTGCTGGGAAGAAGAGCTGGATCGTCAACCTAGAGGGAGGCGGATGGTGCGAGAGCG
TGATGGAGTGCATGTACCGCAAGGGCAGCCGCCTCGGCTCCTCGAACCTCATGGAGAGGC
AGCTGGAGTTCCGTGGCATCTTGAGCTCCAACCCCGCTGAGAACCCTGATTTCTACAGTT
GGAACCGGGTGATGGTCCGCTACTGCGACGGCGCGTCCTTCACCGGCGAAGGCTACAACG
CGGGCTCGAAGGTCTATTTCCGGGGCCAGCGCATTTGGAACGCCGTCATGCAGCACCTCC
TCTCCATTGGGATGTCGTCGGCGGATCAGGTGCTGCTGGCGGGCGGCTCCGCCGGGGGGC
TGTCGGCGATCCTGCACTGCGACCAGTTCGGCACCTTCTTCGCCGGCCGGAGCACCACCG
TCAAGTGTCTCGCCGACGCAGGACTCTTCCTGGACGCCGTCGACATCTCCGGCGGCCGTA
CTTTGAGATCCTATTTCGGAGGCATTGTAGCCACGCATGGGGTGGCTCAGAACCTGCCCA
GGAGTTGCACCGGTCATCTCGACGCCACCTCGTGCTTCTTCCCCCAGAATATAATCGGCA
GCATAAATACCCCCATCTTCCTGCTGAATGCAGCCTACGATACCTGGCAGATCCATGAAA
GCCTGGCCCCGGACGTAGCCGACCACAACGGCGCCTGGCGAGCCTGCAAGTCCAATCGTT
TAGCTTGCAACGCATCCCAGATGAAAGTCTTGCAAGCTTTCAGGGACCAGATGGTGGGAA
TTGTCCAAGGCTTGTCCCGCTCCAAGAGCTACGGCCTCTTCATCAACTCGTGCTTCACGC
ACGGCCAGTCCAAAGTCCCGGCTACTTGGAATGCAAATGGCTCTCCTACTATTCATAATA
AGAGCATTGCGAAATCTGTGAGTGACTGGTACTTTGGCCGGGCTGAAGTGAGGGCCATCG
ATTGCCCCTACCCCTGCGACCACACATGCCATCACGACATGTGAGAAGAGCTGCAGATTT
GATTAGTGTCTTGTACTATTTTTTGTCAACTCGTTCCAGAGAAGACAAATATGTGCATAT
CAAGGCTGGTGACTAATCACTGTACCGGCAGATGAGCTCAAGCACATCCTGCAAAAACTT
AATATCAAGATTGAGTAATTACAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21630.1	419	3e-173	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g12057.1	406	0.0
Arabidopsis v10	AT2G46930.1	416	3e-149	Pectinacetylesterase family protein \| chr2:19283625-19286090 FORWARD LENGTH=416