barSeed - Barley Seed Development Database

Probe ABC09031

Source Contig ABC09031

barSeed

Links

Affymetrix Source Sequence (1717 bp)

>ABC09031 1717
CGTTGGATCAATCAGAAAGAAATCATCTCTCGACATATCTAGAGCTCTTCTTCTTCTTCT
TCTTCTTCCTCCTCCTCCTCAGCTCCCGAGCTCATCCTGAGCATAGCAAGGCAAGCCATA
GCCGGAAGATCCGGTCGAGAGGGCGGGACCATGTCGGACGTGACGGAGGTGATGGATCTG
GGGGCGGAGGAGCCGCGGCTGTCGCTCCCGCCGGGCTTCCGGTTCCACCCGACCGATGAG
GAGGTGGTCACCCACTACCTCACCCCCAAGGCCGTCAACAACTCCTTCTCCTGCCTCGTG
ATCGCCGACGTCGACCTCAACAAGACCGAGCCGTGGGACCTCCCCGGGAAGGCGAAGATG
GGGGAGAAGGAGTGGTACTTCTTCGTGCACAAGGACCGCAAGTACCCGACGGGGACGCGC
ACCAACCGGGCCACGGAGCGCGGCTACTGGAAGGCGACGGGGAAGGACAAGGAGATCTTC
CGCGGCAAGGGCCGGGACGCCGTGCTCGTCGGCATGAAGAAGACGCTCGTCTTCTACACC
GGCCGCGCCCCCCGCGGCGATAAGACGCCCTACGTCATGCACGAGTACCGCCTCGAGGGC
CAGCTGCCCCACCGCCTCCACCGCTCAGCCAAGAACGATTGGGCTGTTTGCCGGGTGTTC
GACAAAGACTTGGCGGCGAAGAATGCGCCGCAAGTGCCGCCACCGCCGGCGGCCGCCGGG
GCCATGGAGGACCCGTACGCCTTTCTCGACGACTTCCTCAACAACCCCGACCTGCCGATG
CTCATGGACTCCCCCTCCGGCGCGGACGACTTCGCCGCCGCGTCGAGCTCGACCTCCAGC
GCGGCCCTGCCGCTCGAGCCGGACACGGAGCAGCTGACCATCAAGACGGAGCCGCCGGTG
ACGCAGCAGCAGATGCAGAGCCCCAACTACTTCTTCATGCCGGCGACGACGGGCAGCGGC
AACCACGGCGGCGGCGCCGGGTACTCGCCCTACCTGCAGGGAGCCATGGGCGGGGACCAG
CAGGCGGCGATCCGCAGGCACTGCAAGCCGGAGGCGGCGTCATCGTCGGCGCTGCTGCAG
ACCCCTTCGCTCGGCTTCTTCGACACGGGCGCGCTCGCCGGCGCCGCGGACACCTCGTTC
CCGATGATGCCGTCGTCGCGGTCGTACGTCGATCTGGAGCAGCTGTGCCGGGGCGAGCCT
CCCATGGACTTCTCCAACATGTGGTAGATCCATCTGAAATCCATCCATCCATCCATCCAT
CTACCCGATGGACAGGATCGTCTCCGGCCGTTTGCTTTGGTGGTAGCCATAGATGGTTAA
TTAATTTGGTTGGTGCTAGCCGGTGGATTGATTAGTTTGCTTCATTAACTTGGATTAAGG
ATTGGGTTAATTAGCCGGCGACGATTCGAGGAGGAGGAGGATCGTCGTGTGTGTGTTTGT
TGTTGATGCGTGCAAGGCATAATGATGGCCTGTGAGCGAGGGGGAGTGCTGATTAATCTT
GATTAGGGTGTGATATCAAACTGCTAGTAGGAGGCATGCATCTGTAGTTTGTACATACAT
AGTCACCTGATGCGTGATCGCCGTGATACAGTTTAGCGATTAGGGGACGATGGACCGGAG
GGCGAGAGGTGTGCCGAGACCGAGTTGATTGGTAAATCTGATTGTGTGCTGCTGATTGAA
ATGAATTATTCCCCTTCTAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_65400.1	2061	0.0	66 - 1763	99	1697 / 1698	CUST_34046_PI390587928	ABC09031 ABC09032 ABC24230
AK367098	3456	0.0	1781 - 3456	98	1656 / 1682	None	ABC09031 ABC09032 ABC24230
MLOC_65400.2	754	0.0	42 - 674	99	632 / 633	None	ABC09031
AK366525	1571	0.0	50 - 706	85	583 / 684	CUST_36755_PI390587928	ABC09031 ABC09032 ABC09757 ABC24230
MLOC_72602.1	1290	0.0	117 - 886	89	720 / 807	None	ABC09031 ABC09032 ABC24230
MLOC_72602.2	1039	0.0	39 - 808	89	720 / 807	None	ABC09031 ABC09032 ABC24230
MLOC_72602.3	943	0.0	3 - 745	90	695 / 776	None	ABC09031 ABC09032 ABC24230
MLOC_72602.4	971	0.0	1 - 742	90	694 / 775	None	ABC09031 ABC09032 ABC24230
AK368567	1545	0.0	57 - 724	85	584 / 689	CUST_36755_PI390587928 CUST_6154_PI390587928 CUST_36740_PI390587928	ABC09031 ABC09032 ABC09757 ABC24230
MLOC_30746.1	887	0.0	177 - 887	88	660 / 752	CUST_36740_PI390587928	ABC09031 ABC09032 ABC24230
MLOC_65714.1	1031	1e-165	347 - 936	85	511 / 603	None	ABC09031
MLOC_40873.1	588	5e-134	11 - 465	86	406 / 473	CUST_36755_PI390587928 CUST_6154_PI390587928	ABC09031 ABC09757
MLOC_40873.2	522	1e-109	19 - 405	85	346 / 405	CUST_36755_PI390587928 CUST_6154_PI390587928	ABC09031