barSeed - Barley Seed Development Database

Probe CUST_34046_PI390587928

Source Contig U35_18477

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34046_PI390587928	Hv_44K_v2	ACCGAGTTGATTGGTAAATCTGATTGTGTGCTGCTGATTGAAATGAATTATTCCCCTTCT	1638	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.541	4.209	1.401	0.735	0.393	0.464
Raw	510.152	996.250	267.789	226.220	43.023	55.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65400.1	2061	2e-24	1704 - 1763	100	60 / 60	plus	ABC09031 ABC09032 ABC24230
JLOC1	JLOC1_43035.1	2123	8e-25	1794 - 1853	100	60 / 60	plus
Harvest21	ABC09031	1717	3e-25	1639 - 1698	100	60 / 60	plus	ABC09031
Harvest35	U35_18477	1717	3e-25	1639 - 1698	100	60 / 60	plus

Contig Sequence (1717 bp)

>U35_18477 1717 Hv_44K_v2
CGTTGGATCAATCAGAAAGAAATCATCTCTCGACATATCTAGAGCTCTTCTTCTTCTTCT
TCTTCTTCCTCCTCCTCCTCAGCTCCCGAGCTCATCCTGAGCATAGCAAGGCAAGCCATA
GCCGGAAGATCCGGTCGAGAGGGCGGGACCATGTCGGACGTGACGGAGGTGATGGATCTG
GGGGCGGAGGAGCCGCGGCTGTCGCTCCCGCCGGGCTTCCGGTTCCACCCGACCGATGAG
GAGGTGGTCACCCACTACCTCACCCCCAAGGCCGTCAACAACTCCTTCTCCTGCCTCGTG
ATCGCCGACGTCGACCTCAACAAGACCGAGCCGTGGGACCTCCCCGGGAAGGCGAAGATG
GGGGAGAAGGAGTGGTACTTCTTCGTGCACAAGGACCGCAAGTACCCGACGGGGACGCGC
ACCAACCGGGCCACGGAGCGCGGCTACTGGAAGGCGACGGGGAAGGACAAGGAGATCTTC
CGCGGCAAGGGCCGGGACGCCGTGCTCGTCGGCATGAAGAAGACGCTCGTCTTCTACACC
GGCCGCGCCCCCCGCGGCGATAAGACGCCCTACGTCATGCACGAGTACCGCCTCGAGGGC
CAGCTGCCCCACCGCCTCCACCGCTCAGCCAAGAACGATTGGGCTGTTTGCCGGGTGTTC
GACAAAGACTTGGCGGCGAAGAATGCGCCGCAAGTGCCGCCACCGCCGGCGGCCGCCGGG
GCCATGGAGGACCCGTACGCCTTTCTCGACGACTTCCTCAACAACCCCGACCTGCCGATG
CTCATGGACTCCCCCTCCGGCGCGGACGACTTCGCCGCCGCGTCGAGCTCGACCTCCAGC
GCGGCCCTGCCGCTCGAGCCGGACACGGAGCAGCTGACCATCAAGACGGAGCCGCCGGTG
ACGCAGCAGCAGATGCAGAGCCCCAACTACTTCTTCATGCCGGCGACGACGGGCAGCGGC
AACCACGGCGGCGGCGCCGGGTACTCGCCCTACCTGCAGGGAGCCATGGGCGGGGACCAG
CAGGCGGCGATCCGCAGGCACTGCAAGCCGGAGGCGGCGTCATCGTCGGCGCTGCTGCAG
ACCCCTTCGCTCGGCTTCTTCGACACGGGCGCGCTCGCCGGCGCCGCGGACACCTCGTTC
CCGATGATGCCGTCGTCGCGGTCGTACGTCGATCTGGAGCAGCTGTGCCGGGGCGAGCCT
CCCATGGACTTCTCCAACATGTGGTAGATCCATCTGAAATCCATCCATCCATCCATCCAT
CTACCCGATGGACAGGATCGTCTCCGGCCGTTTGCTTTGGTGGTAGCCATAGATGGTTAA
TTAATTTGGTTGGTGCTAGCCGGTGGATTGATTAGTTTGCTTCATTAACTTGGATTAAGG
ATTGGGTTAATTAGCCGGCGACGATTCGAGGAGGAGGAGGATCGTCGTGTGTGTGTTTGT
TGTTGATGCGTGCAAGGCATAATGATGGCCTGTGAGCGAGGGGGAGTGCTGATTAATCTT
GATTAGGGTGTGATATCAAACTGCTAGTAGGAGGCATGCATCTGTAGTTTGTACATACAT
AGTCACCTGATGCGTGATCGCCGTGATACAGTTTAGCGATTAGGGGACGATGGACCGGAG
GGCGAGAGGTGTGCCGAGACCGAGTTGATTGGTAAATCTGATTGTGTGCTGCTGATTGAA
ATGAATTATTCCCCTTCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48550.1	302	2e-91	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi1g17440.1	303	4e-89
Arabidopsis v10	AT5G39610.1	285	3e-74	\| Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6 \| NAC domain containing protein 6 \| chr5:15858591-15859650 REVERSE LENGTH=285