barSeed - Barley Seed Development Database

Probe ABC09757

Source Contig ABC09757

barSeed

Links

Affymetrix Source Sequence (1486 bp)

>ABC09757 1486
GAAAAGTGGATGATGCTTCTAGCATGCCTGCTATGTGCTTCTGTTTCATACACGATTCAA
GCTTTCTATGATTTGTTTGGTTGATTCCTAGAGGTGTGATAGATGGACATCAATTAGTTA
TCCTTGCAGGGGAAAGGAAGTGATGGAGCACGGCGAGCAGGAGCAGCACGCCATGGAGCT
GCCGCCGGGCTTCCGCTTCCACCCGACCGACGAGGAGCTCATCACGCACTACCTGGCCAA
GAAGGTGGCCGACGCCCGCTTCGCCGCCCTCGCCGTCTCCGTCGCCGACCTCAACAAGTG
CGAGCCCTGGGACCTGCCAGCGCTGGCTAGGATGGGGGAGAAGGAGTGGTACTTCTTCTG
CCTCAAGGACCGCAAGTACCCGACGGGGTTGAGGACGAACAGGGCGACGGAGTCCGGCTA
CTGGAAGGCCACCGGCAAGGACAAGGACATCTTGAGGGGCAAGGCCCTCGTCGGCATGAA
GAAGACGCTCGTCTTCTACACCGGGAGGGCGCCCAAGGGCGAGAAGTCCGGCTGGGTCAT
GCACGAGTACCGCCTCAACGCCAAGCTCCACGCCGCCAGCACCAGCCGCGGCTCCCTCCC
CGGCAGCAGGGCCGCGTCGTCCTCGTCGTCCAAGAACGAGTGGGTGCTGTGCAGGGTGTT
CAAGAAGAGCCTCGTAGGCGTAGTGTCGCCGGCGCCGGCGTCGTCAGCAGCAAGGAAAAG
CGGCGTGGGGATGATCGAGGAGATAGGTTCCACCGTGGCCGCCGTCACCCCGCTCCCTCC
GCTCCTGGACATGTCCGGCTCCGGCGCCTCCTTCGACCAGGCGGCGCACGTGACCTGCTT
CTCCAACAACGCGCTGGAGGCGGGCCAGTTCTTCAACCCGACGGCGACGGACCAGGACCA
GCACGGCCTAGCCACATACTCCCCGCTAGCAAGCTTCGCGCAGTACGGCGGGCAGCTGCA
CCACGGCGTGAGCCTGAGCCTGGTGCAGCTCCTCGAGAGCAGCGGGTACCACCGTGGTCT
CGCCGACGACATGGCGCCGTGCGGCAACCAGCAGCAGCCGGCCGCGTGCAGGGGCGAGCG
GGAGAAGCTGAGCGCGTCGCAGGACACCGGGCTCACCTCCGACGTGAACCCCGAGATCTC
TTCTTCCTTGGGCCAAAAGTCGTTCGACCACGAGCCCGCGCCGTGGGGCTACTAACCAAG
CAAAGCTCTACGCATGCACCGCGTTCGCGGCGAAGGATGGATGGATCGATGGATTATTAG
TGCATTTACCGGTGCTTGATTACTGTAAATAAACCCGCGAGAGGTCGAGCTAGCACCGTC
AATTAGCTTCATTGTGATGTGATGATCTGTATAGTTGTAGATTAATCGGTGTGGTGATTT
GGGGGTGTAATTAGCACTATTGTATTTGGCTCCATTGATATACTAGTATATATATATGAA
TGTCATTGTCATTTCGCCAGGTTATTACTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_75522.3	1728	0.0	7 - 1465	99	1456 / 1466	CUST_17900_PI390587928	ABC09757
MLOC_75522.2	1631	0.0	7 - 1464	99	1455 / 1469	CUST_17900_PI390587928	ABC09757
MLOC_75522.6	1590	0.0	1 - 1399	99	1396 / 1410	None	ABC09757
MLOC_75522.5	1817	6e-58	1429 - 1554	99	125 / 126	CUST_17900_PI390587928	ABC09757
MLOC_75522.4	1512	0.0	7 - 1344	99	1336 / 1338	CUST_17900_PI390587928	ABC09757
MLOC_75522.1	1508	0.0	7 - 1339	99	1331 / 1333	CUST_17900_PI390587928	ABC09757
AK363948	1909	1e-59	154 - 279	100	126 / 126	CUST_24828_PI390587928 CUST_17900_PI390587928	ABC09757
MLOC_75522.7	850	1e-163	535 - 850	99	315 / 316	None	ABC09757
MLOC_64057.2	1651	7e-77	180 - 578	80	325 / 405	CUST_38573_PI390587928 CUST_19686_PI390587928 CUST_15161_PI390587928	ABC09757 ABC11098
AK366525	1571	3e-65	138 - 551	78	326 / 419	CUST_36755_PI390587928	ABC09031 ABC09032 ABC09757 ABC24230
AK368567	1545	4e-60	156 - 569	77	323 / 419	CUST_36755_PI390587928 CUST_6154_PI390587928 CUST_36740_PI390587928	ABC09031 ABC09032 ABC09757 ABC24230
MLOC_40873.1	588	2e-57	33 - 310	81	228 / 280	CUST_36755_PI390587928 CUST_6154_PI390587928	ABC09031 ABC09757
MLOC_64057.1	1625	1e-54	438 - 679	83	203 / 244	CUST_38573_PI390587928 CUST_19686_PI390587928 CUST_15161_PI390587928	ABC09757 ABC11098